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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285608 (52 seq.)
>W1710786278
LJIV01000010
Bacillota
Leuconostoc lactis [LJIV]
33836
33908
+
Arg
CCT
[ENA]
¡û
>W1711627391
MPLL01000002
Bacillota
Leuconostoc lactis [MPLL]
44334
44406
+
Arg
CCT
[ENA]
¡û
>W1711627485
MPLN01000002
Bacillota
Leuconostoc lactis [MPLN]
44334
44406
+
Arg
CCT
[ENA]
¡û
>W1711999755
NDXG01000002
Bacillota
Leuconostoc citreum [NDXG]
126737
126663
-
Arg
CCT
[ENA]
¡û
>C171047491
CP016329
Bacillota
Leuconostoc garlicum KFRI01 [CP016329]
999678
999606
-
Arg
CCT
-
¡û
>WENV180503497
OCAM01032738
[OCAM] human gut metagenome; faeces
247
319
+
Arg
CCT
[ENA]
¢þ
>WENV180566393
OCLI01002782
[OCLI] human gut metagenome; human gut
129
55
-
Arg
CCT
[ENA]
¢þ
>WENV182610710
OJJW01000180
[OJJW] metagenome; faeces
2811
2739
-
Arg
CCT
[ENA]
¢þ
>C08006032
DQ489736
Bacillota
Leuconostoc citreum KM20 [DQ489736]
564572
564498
-
Arg
CCT
[Ensembl]
¡û
>C191155373
CP037939
Bacillota
Leuconostoc kimchii NKJ218 [CP037939]
660087
660015
-
Arg
CCT
-
¡û
>W141695492
JMEA01000002
Bacillota
Leuconostoc lactis [JMEA]
56779
56707
-
Arg
CCT
[ENA]
¡û
>W1910181826
BJMJ01000010
Bacillota
Leuconostoc lactis NBRC 12455 [BJMJ]
13123
13195
+
Arg
CCT
[ENA]
¡û
>W1910821988
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
1504997
1504923
-
Arg
CCT
[ENA]
¡û
>W1911177237
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
526153
526081
-
Arg
CCT
[ENA]
¡û
>W1911283565
NTJC01000001
Bacillota
Leuconostoc citreum TR116 [NTJC]
268635
268709
+
Arg
CCT
[ENA]
¡û
>W1911495477
OBMW01000021
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum MFPA44A1401 [OBMW]
63602
63674
+
Arg
CCT
[ENA]
¡û
>W1911540002
ONZM01000007
Bacillota
Leuconostoc carnosum MFPC16A2803 [ONZM]
287679
287751
+
Arg
CCT
[ENA]
¡û
>W1911541726
OOIO01000005
Bacillota
Leuconostoc carnosum MFPA29A1405 [OOIO]
222465
222537
+
Arg
CCT
[ENA]
¡û
>W1911631708
PUFH01000005
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
608010
608084
+
Arg
CCT
[ENA]
¡û
>W1510046216
CCNG01000004
Bacillota
Leuconostoc citreum [CCNG]
337847
337773
-
Arg
CCT
[ENA]
¡û
>W1510046283
CCNH01000002
Bacillota
Leuconostoc citreum [CCNH]
364383
364309
-
Arg
CCT
[ENA]
¡û
>C10108441
CP001758
Bacillota
Leuconostoc kimchii IMSNU 11154 [CP001758]
435174
435249
+
Arg
CCT
[Ensembl]
¡û
>C11112673
CP002898
Bacillota
Leuconostoc sp. C2 [CP002898]
140705
140630
-
Arg
CCT
[Ensembl]
¡û
>C11112806
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
1304814
1304889
+
Arg
CCT
[Ensembl]
¡û
>W1511468946
JVUU01000012
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
98484
98558
+
Arg
CCT
[ENA]
¡û
>W1511469001
JVUV01000024
Bacillota
Leuconostoc citreum 1300_LCIT [JVUV]
32681
32753
+
Arg
CCT
[ENA]
¡û
>W11137128
AEGQ01000079
Bacillota
Leuconostoc lactis KCTC 3773 [AEGQ]
44210
44282
+
Arg
CCT
[ENA]
¡û
>W11140956
AEMI01000037
Bacillota
Leuconostoc gelidum KCTC 3527 [AEMI]
23204
23279
+
Arg
CCT
[ENA]
¡û
>W11141003
AEMJ01000816
Bacillota
Leuconostoc inhae KCTC 3774 [AEMJ]
3856
3931
+
Arg
CCT
[ENA]
¡û
>W11142041
AEOR01000588
Bacillota
Leuconostoc lactis KCTC 3528 [AEOR]
415
487
+
Arg
CCT
[ENA]
¡û
>W11184746
BACM01002068
Bacillota
Leuconostoc carnosum KCTC 3525 [BACM]
75
147
+
Arg
CCT
[ENA]
¡û
>W11184747
BACM01002069
Bacillota
Leuconostoc carnosum KCTC 3525 [BACM]
76
148
+
Arg
CCT
[ENA]
¡û
>C161100068
CP016598
Bacillota
Leuconostoc lactis WiKim40 [CP016598]
305708
305780
+
Arg
CCT
[Ensembl]
¡û
>C161107379
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
1369416
1369491
+
Arg
CCT
[Ensembl]
¡û
>W121127438
CAGE01000005
Bacillota
Leuconostoc citreum LBAE C10 [CAGE]
60490
60564
+
Arg
CCT
[ENA]
¡û
>W121127475
CAGF01000002
Bacillota
Leuconostoc citreum LBAE C11 [CAGF]
82288
82362
+
Arg
CCT
[ENA]
¡û
>W121127541
CAGG01000006
Bacillota
Leuconostoc citreum LBAE E16 [CAGG]
42607
42533
-
Arg
CCT
[ENA]
¡û
>W1610187657
FBSX01000009
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
129945
129870
-
Arg
CCT
[ENA]
¡û
>W1610187693
FBSY01000001
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
104337
104412
+
Arg
CCT
[ENA]
¡û
>W1610187775
FBTB01000022
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
38053
37978
-
Arg
CCT
[ENA]
¡û
>W1610187806
FBTC01000023
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
132938
133013
+
Arg
CCT
[ENA]
¡û
>W1610187833
FBTD01000008
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
131054
130979
-
Arg
CCT
[ENA]
¡û
>W1610187870
FBTU01000017
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
244551
244626
+
Arg
CCT
[ENA]
¡û
>C131007801
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
1303190
1303265
+
Arg
CCT
[Ensembl]
¡û
>C131008313
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
1112627
1112699
+
Arg
CCT
[Ensembl]
¡û
>W1610650133
LJIV01000010
Bacillota
Leuconostoc lactis [LJIV]
33836
33908
+
Arg
CCT
[ENA]
¡û
>W1710189273
FBSX01000009
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
129945
129870
-
Arg
CCT
[ENA]
¡û
>W1710189309
FBSY01000001
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
104337
104412
+
Arg
CCT
[ENA]
¡û
>W1710189391
FBTB01000022
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
38053
37978
-
Arg
CCT
[ENA]
¡û
>W1710189422
FBTC01000023
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
132938
133013
+
Arg
CCT
[ENA]
¡û
>W1710189449
FBTD01000008
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
131054
130979
-
Arg
CCT
[ENA]
¡û
>W1710189486
FBTU01000017
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
244551
244626
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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