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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285609 (51 seq.)
>W1710786290
LJIV01000012
Bacillota
Leuconostoc lactis [LJIV]
31082
31006
-
Thr
AGT
[ENA]
¡û
>W1711627398
MPLL01000005
Bacillota
Leuconostoc lactis [MPLL]
34177
34101
-
Thr
AGT
[ENA]
¡û
>W1711627491
MPLN01000004
Bacillota
Leuconostoc lactis [MPLN]
34177
34101
-
Thr
AGT
[ENA]
¡û
>W1711999760
NDXG01000003
Bacillota
Leuconostoc citreum [NDXG]
31122
31048
-
Thr
AGT
[ENA]
¡û
>C171047501
CP016329
Bacillota
Leuconostoc garlicum KFRI01 [CP016329]
343581
343505
-
Thr
AGT
-
¡û
>WENV180192720
OAXJ01064416
[OAXJ] human gut metagenome; faeces
110
185
+
Thr
AGT
[ENA]
¢þ
>WENV180503318
OCAM01012400
[OCAM] human gut metagenome; faeces
117
192
+
Thr
AGT
[ENA]
¢þ
>WENV182610809
OJJW01000693
[OJJW] metagenome; faeces
2916
2991
+
Thr
AGT
[ENA]
¢þ
>C08005970
DQ489736
Bacillota
Leuconostoc citreum KM20 [DQ489736]
202270
202344
+
Thr
AGT
[Ensembl]
¡û
>C191155313
CP037939
Bacillota
Leuconostoc kimchii NKJ218 [CP037939]
266985
267059
+
Thr
AGT
-
¡û
>W141695523
JMEA01000014
Bacillota
Leuconostoc lactis [JMEA]
20590
20666
+
Thr
AGT
[ENA]
¡û
>W1910181823
BJMJ01000008
Bacillota
Leuconostoc lactis NBRC 12455 [BJMJ]
41427
41502
+
Thr
AGT
[ENA]
¡û
>W1910821974
MWJP01000001
Bacillota
Leuconostoc citreum CW28 [MWJP]
1130151
1130225
+
Thr
AGT
[ENA]
¡û
>W1911177175
NQLF01000001
Bacillota
Leuconostoc lactis CCK940 [NQLF]
167512
167587
+
Thr
AGT
[ENA]
¡û
>W1911283600
NTJC01000005
Bacillota
Leuconostoc citreum TR116 [NTJC]
103314
103388
+
Thr
AGT
[ENA]
¡û
>W1911495510
OBMW01000049
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum MFPA44A1401 [OBMW]
44466
44540
+
Thr
AGT
[ENA]
¡û
>W1911540015
ONZM01000020
Bacillota
Leuconostoc carnosum MFPC16A2803 [ONZM]
31256
31181
-
Thr
AGT
[ENA]
¡û
>W1911541740
OOIO01000010
Bacillota
Leuconostoc carnosum MFPA29A1405 [OOIO]
31256
31181
-
Thr
AGT
[ENA]
¡û
>W1911631666
PUFH01000002
Bacillota
Leuconostoc citreum ATCC 49370 [PUFH]
198891
198965
+
Thr
AGT
[ENA]
¡û
>W1510046206
CCNG01000003
Bacillota
Leuconostoc citreum [CCNG]
146015
146089
+
Thr
AGT
[ENA]
¡û
>W1510046269
CCNH01000001
Bacillota
Leuconostoc citreum [CCNH]
201617
201691
+
Thr
AGT
[ENA]
¡û
>C10108446
CP001758
Bacillota
Leuconostoc kimchii IMSNU 11154 [CP001758]
878968
879042
+
Thr
AGT
[Ensembl]
¡û
>C11112623
CP002898
Bacillota
Leuconostoc sp. C2 [CP002898]
1583701
1583627
-
Thr
AGT
[Ensembl]
¡û
>C11112798
FN822744
Bacillota
Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811 [FN822744]
322376
322450
+
Thr
AGT
[Ensembl]
¡û
>W1511468997
JVUU01000037
Bacillota
Leuconostoc citreum subsp. gasicomitatum 1301_LGAS [JVUU]
30913
30839
-
Thr
AGT
[ENA]
¡û
>W1511469023
JVUV01000031
Bacillota
Leuconostoc citreum 1300_LCIT [JVUV]
41909
41985
+
Thr
AGT
[ENA]
¡û
>W11137116
AEGQ01000037
Bacillota
Leuconostoc lactis KCTC 3773 [AEGQ]
44957
45033
+
Thr
AGT
[ENA]
¡û
>W11140930
AEMI01000015
Bacillota
Leuconostoc gelidum KCTC 3527 [AEMI]
11819
11745
-
Thr
AGT
[ENA]
¡û
>W11140996
AEMJ01000496
Bacillota
Leuconostoc inhae KCTC 3774 [AEMJ]
11774
11700
-
Thr
AGT
[ENA]
¡û
>W11142046
AEOR01000726
Bacillota
Leuconostoc lactis KCTC 3528 [AEOR]
1783
1707
-
Thr
AGT
[ENA]
¡û
>W11184753
BACM01002204
Bacillota
Leuconostoc carnosum KCTC 3525 [BACM]
1535
1459
-
Thr
AGT
[ENA]
¡û
>C161100120
CP016598
Bacillota
Leuconostoc lactis WiKim40 [CP016598]
662269
662193
-
Thr
AGT
[Ensembl]
¡û
>C161107371
LN890331
Bacillota
Leuconostoc gasicomitatum KG16-1 [LN890331]
331760
331834
+
Thr
AGT
[Ensembl]
¡û
>W121127435
CAGE01000002
Bacillota
Leuconostoc citreum LBAE C10 [CAGE]
20842
20768
-
Thr
AGT
[ENA]
¡û
>W121127489
CAGF01000005
Bacillota
Leuconostoc citreum LBAE C11 [CAGF]
188
114
-
Thr
AGT
[ENA]
¡û
>W121127546
CAGG01000008
Bacillota
Leuconostoc citreum LBAE E16 [CAGG]
214
140
-
Thr
AGT
[ENA]
¡û
>W1610187674
FBSX01000025
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
223248
223174
-
Thr
AGT
[ENA]
¡û
>W1610187725
FBSY01000017
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
241316
241242
-
Thr
AGT
[ENA]
¡û
>W1610187766
FBTB01000019
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
227339
227265
-
Thr
AGT
[ENA]
¡û
>W1610187795
FBTC01000016
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
230645
230571
-
Thr
AGT
[ENA]
¡û
>W1610187823
FBTD01000003
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
169791
169717
-
Thr
AGT
[ENA]
¡û
>W1610187891
FBTU01000024
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
68986
69060
+
Thr
AGT
[ENA]
¡û
>C131007793
CP003839
Bacillota
Leuconostoc gelidum JB7 [CP003839]
317921
317995
+
Thr
AGT
[Ensembl]
¡û
>C131008317
CP003851
Bacillota
Leuconostoc carnosum JB16 [CP003851]
1481669
1481593
-
Thr
AGT
[Ensembl]
¡û
>W1610650145
LJIV01000012
Bacillota
Leuconostoc lactis [LJIV]
31082
31006
-
Thr
AGT
[ENA]
¡û
>W1710189290
FBSX01000025
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBSX]
223248
223174
-
Thr
AGT
[ENA]
¡û
>W1710189341
FBSY01000017
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBSY]
241316
241242
-
Thr
AGT
[ENA]
¡û
>W1710189382
FBTB01000019
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTB]
227339
227265
-
Thr
AGT
[ENA]
¡û
>W1710189411
FBTC01000016
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTC]
230645
230571
-
Thr
AGT
[ENA]
¡û
>W1710189439
FBTD01000003
Bacillota
Leuconostoc gasicomitatum subsp. gasicomitatum [FBTD]
169791
169717
-
Thr
AGT
[ENA]
¡û
>W1710189507
FBTU01000024
Bacillota
Leuconostoc inhae subsp. gasicomitatum [FBTU]
68986
69060
+
Thr
AGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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