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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285635 (38 seq.)
>W131250006
CAUI01000004
Bacillota
Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 [CAUI]
754
829
+
Lys
TTT
[ENA]
¡û
>W131250029
CAUI01000015
Bacillota
Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 [CAUI]
314371
314296
-
Lys
TTT
[ENA]
¡û
>w015293
AAOZ01000003
Bacillota
Halothermothrix orenii H 168 [AAOZ]
83372
83295
-
Lys
TTT
[ENA]
¡û
>WENV170675104
LCWZ01006247
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
299
224
-
Lys
TTT
[ENA]
¢þ
>WENV170681282
LFFM01000379
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
551
476
-
Lys
TTT
[ENA]
¢þ
>C09106599
CP001098
Bacillota
Halothermothrix orenii H 168 H 168; DSM 9562 [CP001098]
1201158
1201233
+
Lys
TTT
[Ensembl]
¡û
>W1810486204
QAXS01000011
Bacillota
Halanaerobium saccharolyticum WC1 [QAXS]
4386
4311
-
Lys
TTT
[ENA]
¡û
>W1810486218
QAXS01000031
Bacillota
Halanaerobium saccharolyticum WC1 [QAXS]
35605
35530
-
Lys
TTT
[ENA]
¡û
>W1810503739
QBKJ01000001
Bacillota
Halanaerobium congolense WG5_pb [QBKJ]
1711167
1711242
+
Lys
TTT
[ENA]
¡û
>W1810503769
QBKJ01000001
Bacillota
Halanaerobium congolense WG5_pb [QBKJ]
274848
274773
-
Lys
TTT
[ENA]
¡û
>W1810628413
QICM01000002
Bacillota
Halanaerobium congolense MSL28 [QICM]
13635
13560
-
Lys
TTT
[ENA]
¡û
>W1810628439
QICM01000030
Bacillota
Halanaerobium congolense MSL28 [QICM]
32799
32724
-
Lys
TTT
[ENA]
¡û
>W1810759149
QPJF01000002
Bacillota
Halanaerobium sp. ST460_2HS_T2 [QPJF]
4982
4907
-
Lys
TTT
[ENA]
¡û
>W1810759182
QPJF01000026
Bacillota
Halanaerobium sp. ST460_2HS_T2 [QPJF]
33881
33806
-
Lys
TTT
[ENA]
¡û
>C11110030
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
2189128
2189053
-
Lys
TTT
[Ensembl]
¡û
>C11110050
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
1699526
1699451
-
Lys
TTT
[Ensembl]
¡û
>C11110567
CP002175
Bacillota
Halanaerobium praevalens DSM 2228 [CP002175]
904004
904079
+
Lys
TTT
[Ensembl]
¡û
>C11110589
CP002175
Bacillota
Halanaerobium praevalens DSM 2228 [CP002175]
1911047
1910972
-
Lys
TTT
[Ensembl]
¡û
>W1710511546
FMYT01000001
Bacillota
Halanaerobium congolense [FMYT]
128279
128354
+
Lys
TTT
[ENA]
¡û
>W1710511581
FMYT01000029
Bacillota
Halanaerobium congolense [FMYT]
470
545
+
Lys
TTT
[ENA]
¡û
>W1710514982
FNBJ01000003
Bacillota
Halanaerobium congolense [FNBJ]
34393
34318
-
Lys
TTT
[ENA]
¡û
>W1710514986
FNBJ01000003
Bacillota
Halanaerobium congolense [FNBJ]
33084
33009
-
Lys
TTT
[ENA]
¡û
>W1710517308
FNDF01000010
Bacillota
Halanaerobium congolense [FNDF]
17700
17625
-
Lys
TTT
[ENA]
¡û
>W1710517327
FNDF01000047
Bacillota
Halanaerobium congolense [FNDF]
466
541
+
Lys
TTT
[ENA]
¡û
>W1710521004
FNGB01000001
Bacillota
Halanaerobium congolense [FNGB]
93998
93923
-
Lys
TTT
[ENA]
¡û
>W1710521040
FNGB01000035
Bacillota
Halanaerobium congolense [FNGB]
318
393
+
Lys
TTT
[ENA]
¡û
>W1710522696
FNHK01000002
Bacillota
Halanaerobium congolense [FNHK]
85323
85398
+
Lys
TTT
[ENA]
¡û
>W1710522732
FNHK01000039
Bacillota
Halanaerobium congolense [FNHK]
484
559
+
Lys
TTT
[ENA]
¡û
>W1710553035
FOHG01000003
Bacillota
Halanaerobium congolense [FOHG]
33698
33623
-
Lys
TTT
[ENA]
¡û
>W1710553039
FOHG01000003
Bacillota
Halanaerobium congolense [FOHG]
32850
32775
-
Lys
TTT
[ENA]
¡û
>W1710553290
FOHM01000004
Bacillota
Halanaerobium congolense [FOHM]
62660
62585
-
Lys
TTT
[ENA]
¡û
>W1710553323
FOHM01000036
Bacillota
Halanaerobium congolense [FOHM]
20797
20722
-
Lys
TTT
[ENA]
¡û
>W1710568112
FOTI01000001
Bacillota
Halanaerobium salsuginis [FOTI]
60772
60847
+
Lys
TTT
[ENA]
¡û
>W1710568145
FOTI01000033
Bacillota
Halanaerobium salsuginis [FOTI]
32599
32524
-
Lys
TTT
[ENA]
¡û
>W1710572809
FOWY01000004
Bacillota
Halanaerobium congolense [FOWY]
36136
36061
-
Lys
TTT
[ENA]
¡û
>W1710572813
FOWY01000004
Bacillota
Halanaerobium congolense [FOWY]
33097
33022
-
Lys
TTT
[ENA]
¡û
>W1710592898
FRCV01000001
Bacillota
Halanaerobium congolense [FRCV]
263449
263374
-
Lys
TTT
[ENA]
¡û
>W1710592932
FRCV01000028
Bacillota
Halanaerobium congolense [FRCV]
482
557
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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