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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285736 (14 seq.)
>W131222807
AUBO01000026
Thermodesulfobacteriota
Megalodesulfovibrio gigas DSM 1382 = ATCC 19364 [AUBO]
71375
71450
+
Ala
TGC
[ENA]
¡û
>W131222809
AUBO01000027
Thermodesulfobacteriota
Megalodesulfovibrio gigas DSM 1382 = ATCC 19364 [AUBO]
62136
62061
-
Ala
TGC
[ENA]
¡û
>W131222823
AUBO01000053
Thermodesulfobacteriota
Megalodesulfovibrio gigas DSM 1382 = ATCC 19364 [AUBO]
19060
19135
+
Ala
TGC
[ENA]
¡û
>W131222826
AUBO01000060
Thermodesulfobacteriota
Megalodesulfovibrio gigas DSM 1382 = ATCC 19364 [AUBO]
2495
2570
+
Ala
TGC
[ENA]
¡û
>C007518
CP000112
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [CP000112]
71551
71626
+
Ala
TGC
[Ensembl]
¡û
>C007523
CP000112
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [CP000112]
1311142
1311217
+
Ala
TGC
[Ensembl]
¡û
>C007548
CP000112
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [CP000112]
3537062
3536987
-
Ala
TGC
[Ensembl]
¡û
>C007558
CP000112
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [CP000112]
2607490
2607415
-
Ala
TGC
[Ensembl]
¡û
>WENV180582674
OCMR01042262
[OCMR] metagenome; diffuse fluid
142
67
-
Ala
TGC
[ENA]
¢þ
>W141169809
AXWQ01000028
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis DSM 16109 [AXWQ]
1398
1473
+
Ala
TGC
[ENA]
¡û
>C141005253
CP006585
Thermodesulfobacteriota
Megalodesulfovibrio gigas DSM 1382 = ATCC 19364 [CP006585]
1254406
1254481
+
Ala
TGC
[Ensembl]
¡û
>W1610046080
BBCB01000134
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
3271
3196
-
Ala
TGC
[ENA]
¡û
>W1710042876
BBCB01000134
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
3271
3196
-
Ala
TGC
[ENA]
¡û
>W1710602323
FUYC01000042
Thermodesulfobacteriota
Paucidesulfovibrio gracilis DSM 16080 [FUYC]
2078
2153
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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