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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28579 (14 seq.)
>C019291
CP000661
Alphaproteobacteria
Cereibacter sphaeroides [CP000661]
2166291
2166202
-
Ser
TGA
[Ensembl]
¡û
>WENV181379970
OFRD01018153
[OFRD] wastewater metagenome; Exp Tend CN 100WW
500
411
-
Ser
TGA
[ENA]
¡û
>WENV170551887
CXWJ01028142
[CXWJ] wastewater metagenome; activated sludge
991
902
-
Ser
TGA
[ENA]
¡û
>C191079669
CP031750
Alphaproteobacteria
Cereibacter sphaeroides EBL0706 [CP031750, CP031751]
1908347
1908258
-
Ser
TGA
-
¡û
>W09104723
AAME01000009
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17025 [AAME]
95976
96065
+
Ser
TGA
[ENA]
¡û
>W1810119962
PHSI01000088
Alphaproteobacteria
Cereibacter azotoformans YLK20 [PHSI]
7590
7679
+
Ser
TGA
[ENA]
¡û
>W1810477360
QAOT01000003
Alphaproteobacteria
Cereibacter azotoformans KA25 [QAOT]
245504
245593
+
Ser
TGA
[ENA]
¡û
>SRA1016075
SRR023846.338377
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
202
113
-
Ser
TGA
[SRA]
>W2010586931
JABASZ010000014
Alphaproteobacteria
Altererythrobacter sp. JL3514 [JABASZ]
1923
1834
-
Ser
TGA
[ENA]
¡û
>W2110536110
JAGFXX010000001
Alphaproteobacteria
Luteovulum azotoformans ka25 [JAGFXX]
400747
400836
+
Ser
TGA
[ENA]
¡û
>C231267279
CP089965
Alphaproteobacteria
Cereibacter azotoformans ORIO [CP089965, CP089966]
2005742
2005653
-
Ser
TGA
-
¡û
>C231268859
CP090021
Alphaproteobacteria
Cereibacter azotoformans SY5 [CP090021, CP090022]
1908145
1908056
-
Ser
TGA
-
¡û
>C231375807
CP096971
Alphaproteobacteria
Sphingomonas sp. SUN019 [CP096971]
290349
290438
+
Ser
TGA
-
¡û
>C11117280
CP002568
Alphaproteobacteria
Polymorphum gilvum SL003B-26A1 [CP002568]
2407605
2407516
-
Ser
TGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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