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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285836 (18 seq.)
>W131157090
AQQO01000044
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
69
144
+
Trp
CCA
[ENA]
¡û
>W131157129
AQQO01000358
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
197126
197051
-
Trp
CCA
[ENA]
¡û
>W1711751065
MUNJ01000010
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
246
321
+
Trp
CCA
[ENA]
¡û
>W1711751097
MUNJ01000023
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
36881
36806
-
Trp
CCA
[ENA]
¡û
>WENV183780907
PPYF01188179
[PPYF] human gut metagenome; stool from patient with Crohn's disease
35521
35446
-
Trp
CCA
[ENA]
¢þ
>C181160531
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
2436380
2436455
+
Trp
CCA
-
¡û
>C181160553
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
3120419
3120494
+
Trp
CCA
-
¡û
>C181200204
CP031416
Gammaproteobacteria
Gallaecimonas mangrovi HK-28 [CP031416]
638297
638372
+
Trp
CCA
-
¡û
>W1810423069
PYSI01000002
Gammaproteobacteria
Plesiomonas shigelloides FM82 [PYSI]
374072
373997
-
Trp
CCA
[ENA]
¡û
>W1511347990
JRKB01000101
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
4
79
+
Trp
CCA
[ENA]
¡û
>W1511348000
JRKB01000133
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
142
216
+
Trp
CCA
[ENA]
¡û
>W1511478848
JWHQ01000008
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
91
166
+
Trp
CCA
[ENA]
¡û
>W1511478908
JWHQ01000038
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
15139
15064
-
Trp
CCA
[ENA]
¡û
>W1511688084
LFWC01000016
Gammaproteobacteria
Gallaecimonas pentaromativorans YA_1 [LFWC]
2071
2146
+
Trp
CCA
[ENA]
¡û
>C161109366
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
3344756
3344681
-
Trp
CCA
[Ensembl]
¡û
>C161109388
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
2690968
2690893
-
Trp
CCA
[Ensembl]
¡û
>W1610041901
BAXG01000002
Gammaproteobacteria
Photobacterium sp. JCM 19050 [BAXG]
197
272
+
Trp
CCA
[ENA]
¡û
>W1710038995
BAXG01000002
Gammaproteobacteria
Photobacterium sp. JCM 19050 [BAXG]
197
272
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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