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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28584 (36 seq.)
>W131169909
ARFC01000020
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
3967
3878
-
Ser
CGA
[ENA]
¡û
>W131169930
ARFD01000019
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
44810
44899
+
Ser
CGA
[ENA]
¡û
>W1711504017
MKUD01000072
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
229331
229244
-
Ser
CGA
[ENA]
¡û
>W1711769445
MVEC01000002
Bacteroidota
Spirosoma sp. 209 [MVEC]
33893
33804
-
Ser
CGA
[ENA]
¡û
>C171030754
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
1581256
1581167
-
Ser
CGA
-
¡û
>C171104405
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
4027350
4027263
-
Ser
CGA
-
¡û
>C171104447
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
4026120
4026031
-
Ser
CGA
-
¡û
>W131169829
ARFA01000036
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
81517
81606
+
Ser
CGA
[ENA]
¡û
>WENV170993494
MWWB01327238
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
2
93
+
Ser
CGA
[ENA]
¡û
>C181113126
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
7981078
7981166
+
Ser
CGA
-
¡û
>W09109910
ABUR01000004
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
358507
358418
-
Ser
CGA
[ENA]
¡û
>W1911497268
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
2141712
2141624
-
Ser
CGA
[ENA]
¡û
>W1810364354
PVTE01000001
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
189064
189151
+
Ser
CGA
[ENA]
¡û
>W1810692107
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
1310170
1310083
-
Ser
CGA
[ENA]
¡û
>SRA1016126
SRR023846.357313
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
88
177
+
Ser
CGA
[SRA]
>C151068632
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
3097583
3097494
-
Ser
CGA
[Ensembl]
¡û
>W2010459348
JAAFZH010000010
Bacteroidota
Spirosoma terrae KCTC 52035 [JAAFZH]
145261
145174
-
Ser
CGA
[ENA]
¡û
>W2010468891
JAAGNZ010000001
Bacteroidota
Spirosoma agri KCTC 52727 [JAAGNZ]
2727666
2727756
+
Ser
CGA
[ENA]
¡û
>W2011158172
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
2141712
2141624
-
Ser
CGA
[ENA]
¡û
>W2011532757
SBLB01000003
Bacteroidota
Spirosoma sp. TY50 [SBLB]
466724
466635
-
Ser
CGA
[ENA]
¡û
>W2011705628
SWJG01000001
Bacteroidota
Spirosoma lacussanchae CPCC 100624 [SWJG]
2280945
2281034
+
Ser
CGA
[ENA]
¡û
>W2012412169
WPIM01000001
Bacteroidota
Spirosoma sp. HMF3257 [WPIM]
1310170
1310083
-
Ser
CGA
[ENA]
¡û
>W2012412202
WPIN01000021
Bacteroidota
Spirosoma sp. HMF4905 [WPIN]
99863
99776
-
Ser
CGA
[ENA]
¡û
>W2110282952
JACWZY010000020
Bacteroidota
Spirosoma profusum BT702 [JACWZY]
2011
1924
-
Ser
CGA
[ENA]
¡û
>W2110283033
JACXAA010000007
Bacteroidota
Spirosoma validum BT704 [JACXAA]
194438
194351
-
Ser
CGA
[ENA]
¡û
>C201250753
CP051677
Bacteroidota
Spirosoma sp. CJU-R4 [CP051677]
4048864
4048951
+
Ser
CGA
-
¡û
>C211124438
CP059732
Bacteroidota
Spirosoma sp. PL0136 [CP059732]
2590623
2590710
+
Ser
CGA
-
¡û
>C231263196
CP089538
Bacteroidota
Spirosoma sp. RHs26 [CP089538]
2406636
2406723
+
Ser
CGA
-
¡û
>W2110772294
VFIA01000030
Bacteroidota
Spirosoma utsteinense LMG 31447 [VFIA]
58851
58763
-
Ser
CGA
[ENA]
¡û
>W2110772320
VFIC01000010
Bacteroidota
Spirosoma utsteinense LMG 31448 [VFIC]
56785
56873
+
Ser
CGA
[ENA]
¡û
>C241057066
CP041360
Bacteroidota
Spirosoma sp. KCTC 42546 [CP041360]
4086404
4086492
+
Ser
CGA
-
¡û
>C241140690
CP050063
Bacteroidota
Spirosoma aureum BT328 [CP050063]
5064237
5064150
-
Ser
CGA
-
¡û
>C241156325
CP053435
Bacteroidota
Spirosoma taeanense TS118 [CP053435]
2974966
2974879
-
Ser
CGA
-
¡û
>C241171851
CP056032
Bacteroidota
Spirosoma sp. KUDC1026 [CP056032]
2838174
2838085
-
Ser
CGA
-
¡û
>C10111796
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
2703964
2703875
-
Ser
CGA
[Ensembl]
¡û
>W1710558212
FOLQ01000019
Bacteroidota
Spirosoma endophyticum [FOLQ]
62479
62566
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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