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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285909 (43 seq.)
>W1711392371
MENM01000200
Bacteroidota
Bacteroidetes bacterium GWC1_47_7 [MENM]
13354
13427
+
Lys
CTT
[ENA]
¡û
>W1711392521
MENQ01000026
Bacteroidota
Bacteroidetes bacterium GWC2_46_850 [MENQ]
5910
5837
-
Lys
CTT
[ENA]
¡û
>W1711392626
MENT01000011
Bacteroidota
Bacteroidetes bacterium GWD2_45_23 [MENT]
5871
5798
-
Lys
CTT
[ENA]
¡û
>WENV180015151
FQKF010369577
[FQKF] soil metagenome; Soil
74
1
-
Lys
CTT
[ENA]
¡û
>WENV180041187
LLBZ010061172
[LLBZ] soil metagenome; soil from tomato rhizosphere
1770
1697
-
Lys
CTT
[ENA]
¡û
>WENV180285851
OBID01762127
[OBID] metagenome; sludge
38
111
+
Lys
CTT
[ENA]
¡û
>WENV180690577
OCZS010012202
[OCZS] soil metagenome; soil
1700
1627
-
Lys
CTT
[ENA]
¡û
>WENV181231483
OFEK01030881
[OFEK] activated sludge metagenome; Anaerobic digester
1300
1227
-
Lys
CTT
[ENA]
¡û
>WENV181298427
OFHL01101877
[OFHL] soil metagenome; Clay
240
313
+
Lys
CTT
[ENA]
¡û
>WENV170655946
JTFN01100203
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
465
538
+
Lys
CTT
[ENA]
¡û
>WENV170656033
JTFN01119103
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
544
471
-
Lys
CTT
[ENA]
¡û
>WENV170677547
LDZT01006680
[LDZT] terrestrial metagenome; oil reservoir sample SB1
254
327
+
Lys
CTT
[ENA]
¡û
>WENV170706509
LNAP01003755
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
707
780
+
Lys
CTT
[ENA]
¡û
>C181004330
AP018040
Bacteroidota
Petrimonas sp. IBARAKI [AP018040]
116804
116731
-
Lys
CTT
-
¡û
>C191088384
CP032382
Bacteroidota
Chryseolinea soli KIS68-18 [CP032382]
1671658
1671731
+
Lys
CTT
-
¡û
>W1911747192
QWDC01000001
Bacteroidota
Mucilaginibacter sp. MYSH2 [QWDC]
100101
100028
-
Lys
CTT
[ENA]
¡û
>W1810282718
PSZL01000022
Bacteroidota
Apibacter sp. wkB309 [PSZL]
636336
636263
-
Lys
CTT
[ENA]
¡û
>W1810296337
PTJF01000016
Bacteroidota
Parapedobacter indicus RK1 [PTJF]
38163
38237
+
Lys
CTT
[ENA]
¡û
>W2010685255
JACETV010000002
Bacteroidota
Emticicia sp. BO119 [JACETV]
174616
174542
-
Lys
CTT
[ENA]
¡û
>W2011315804
QWDC01000001
Bacteroidota
Mucilaginibacter sp. MYSH2 [QWDC]
100101
100028
-
Lys
CTT
[ENA]
¡û
>W2011533057
SCEG01000052
Bacteroidota
Isolate-002 (NCI) [SCEG]
17403
17476
+
Lys
CTT
[ENA]
¡û
>W2011557818
SEWF01000017
Bacteroidota
Emticicia sp. 17J42-9 [SEWF]
89907
89980
+
Lys
CTT
[ENA]
¡û
>W2012337243
WINL01000002
Bacteroidota
Apibacter sp. B3935 [WINL]
55022
54949
-
Lys
CTT
[ENA]
¡û
>W2012337281
WINM01000003
Bacteroidota
Apibacter sp. B3924 [WINM]
65282
65209
-
Lys
CTT
[ENA]
¡û
>W2012337296
WINN01000001
Bacteroidota
Apibacter sp. B3918 [WINN]
632245
632318
+
Lys
CTT
[ENA]
¡û
>W2012337341
WINO01000001
Bacteroidota
Apibacter sp. B3913 [WINO]
54032
53959
-
Lys
CTT
[ENA]
¡û
>W2012337368
WINP01000001
Bacteroidota
Apibacter sp. B3912 [WINP]
632245
632318
+
Lys
CTT
[ENA]
¡û
>W2012337411
WINQ01000002
Bacteroidota
Apibacter sp. B3889 [WINQ]
623489
623562
+
Lys
CTT
[ENA]
¡û
>W2012337439
WINR01000001
Bacteroidota
Apibacter sp. B3887 [WINR]
623578
623651
+
Lys
CTT
[ENA]
¡û
>W2012337490
WINS01000002
Bacteroidota
Apibacter sp. B3883 [WINS]
55022
54949
-
Lys
CTT
[ENA]
¡û
>W2012337518
WINT01000001
Bacteroidota
Apibacter sp. B3813 [WINT]
53932
53859
-
Lys
CTT
[ENA]
¡û
>W2012337549
WINU01000001
Bacteroidota
Apibacter sp. B3239 [WINU]
378504
378431
-
Lys
CTT
[ENA]
¡û
>W2012337589
WINV01000001
Bacteroidota
Apibacter sp. B2912 [WINV]
54566
54493
-
Lys
CTT
[ENA]
¡û
>W2012337618
WINW01000002
Bacteroidota
Apibacter sp. B3546 [WINW]
411236
411163
-
Lys
CTT
[ENA]
¡û
>W2110445582
JAERRB010000003
Bacteroidota
Chryseolinea sp. Jin1 [JAERRB]
772731
772658
-
Lys
CTT
[ENA]
¡û
>C211074441
CP048266
Bacteroidota
Apibacter sp. ESL0432 [CP048266]
1481864
1481790
-
Lys
CTT
-
¡û
>C211074480
CP048267
Bacteroidota
Apibacter sp. ESL0404 [CP048267]
1457112
1457039
-
Lys
CTT
-
¡û
>C211273645
CP070276
Bacteroidota
Dysgonomonadaceae bacterium zrk40 [CP070276]
2066136
2066209
+
Lys
CTT
-
¡û
>C241136519
CP049715
Bacteroidota
Apibacter sp. B3706 [CP049715]
564312
564385
+
Lys
CTT
-
¡û
>W1510650955
CVRP01000023
Bacteroidota
Dysgonomonas sp. BGC7 [CVRP]
52961
53034
+
Lys
CTT
[ENA]
¡û
>W1610613940
LGGN01000154
Bacteroidota
Proteiniphilum acetatigenes [LGGN]
254
327
+
Lys
CTT
[ENA]
¡û
>W1710585823
FQWQ01000006
Bacteroidota
Chryseolinea serpens [FQWQ]
40415
40490
+
Lys
CTT
[ENA]
¡û
>W1710735023
LGGN01000154
Bacteroidota
Proteiniphilum acetatigenes [LGGN]
254
327
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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