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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285912 (114 seq.)
>W1710893332
LNEQ01000144
Actinomycetota
Actinobacteria bacterium Ga0077541 [LNEQ]
11712
11640
-
Glu
TTC
[ENA]
¡û
>W131165773
ARBV01000034
Actinomycetota
Nonomuraea coxensis DSM 45129 [ARBV]
72152
72079
-
Glu
TTC
[ENA]
¡û
>W1711710926
MSZZ01000049
Actinomycetota
Thermoactinospora rubra [MSZZ]
37323
37398
+
Glu
TTC
[ENA]
¡û
>W1711792268
MWJN01000023
Actinomycetota
Microbispora sp. GKU 823 [MWJN]
51009
51082
+
Glu
TTC
[ENA]
¡û
>W1712061743
NGFP01000031
Actinomycetota
Streptosporangium minutum M26 [NGFP]
6780
6853
+
Glu
TTC
[ENA]
¡û
>C171066426
CP017717
Actinomycetota
Nonomuraea sp. ATCC 55076 [CP017717]
10720170
10720245
+
Glu
TTC
-
¡û
>C000331
CP000481
Actinomycetota
Acidothermus cellulolyticus 11B 11B; ATCC 43068 [CP000481]
2339526
2339598
+
Glu
TTC
[Ensembl]
¡û
>WENV180292226
OBIV01358758
[OBIV] soil metagenome; Clay
329
256
-
Glu
TTC
[ENA]
¢þ
>WENV180342444
OBLJ01020564
[OBLJ] soil metagenome; Clay
453
526
+
Glu
TTC
[ENA]
¢þ
>WENV180343642
OBLK01052806
[OBLK] soil metagenome; Clay
338
413
+
Glu
TTC
[ENA]
¢þ
>WENV180344031
OBLK01189608
[OBLK] soil metagenome; Clay
93
167
+
Glu
TTC
[ENA]
¢þ
>WENV180355133
OBNG01012013
[OBNG] sediment metagenome; sediment
225
298
+
Glu
TTC
[ENA]
¢þ
>WENV180355613
OBNI01007957
[OBNI] sediment metagenome; sediment
362
435
+
Glu
TTC
[ENA]
¢þ
>WENV180695502
OCZS013562733
[OCZS] soil metagenome; soil
132
205
+
Glu
TTC
[ENA]
¢þ
>WENV181145598
OEHO01358220
[OEHO] metagenome; unknown
115
42
-
Glu
TTC
[ENA]
¢þ
>WENV181162915
OEIO01038341
[OEIO] marine metagenome; sea ice
308
236
-
Glu
TTC
[ENA]
¢þ
>WENV181163585
OEIQ01103395
[OEIQ] soil metagenome; soil
120
193
+
Glu
TTC
[ENA]
¢þ
>WENV181166585
OEIU01000703
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
22242
22170
-
Glu
TTC
[ENA]
¢þ
>WENV181168504
OEIU01410361
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
173
245
+
Glu
TTC
[ENA]
¢þ
>WENV181191585
OEPS010124815
[OEPS] soil metagenome; soil
382
309
-
Glu
TTC
[ENA]
¢þ
>WENV181285794
OFGU01000133
[OFGU] soil metagenome; Clay
10128
10201
+
Glu
TTC
[ENA]
¢þ
>WENV181286141
OFGV01000734
[OFGV] soil metagenome; Clay
4373
4446
+
Glu
TTC
[ENA]
¢þ
>WENV181286332
OFGV01018601
[OFGV] soil metagenome; Clay
282
209
-
Glu
TTC
[ENA]
¢þ
>WENV181291813
OFHD01001880
[OFHD] soil metagenome; Clay
1406
1333
-
Glu
TTC
[ENA]
¢þ
>WENV181292680
OFHF01005838
[OFHF] soil metagenome; Clay
1187
1114
-
Glu
TTC
[ENA]
¢þ
>WENV181293567
OFHG01008523
[OFHG] soil metagenome; Clay
641
714
+
Glu
TTC
[ENA]
¢þ
>WENV181294686
OFHH01025322
[OFHH] soil metagenome; Clay
519
592
+
Glu
TTC
[ENA]
¢þ
>WENV181296819
OFHK01000472
[OFHK] soil metagenome; Clay
10223
10296
+
Glu
TTC
[ENA]
¢þ
>W141135773
AWEV01000101
Actinomycetota
Microbispora sp. ATCC PTA-5024 [AWEV]
51317
51244
-
Glu
TTC
[ENA]
¡û
>WENV183627468
OOGL01006546
[OOGL] marine metagenome; sea ice
930
858
-
Glu
TTC
[ENA]
¢þ
>WENV183631369
OOGU01091343
[OOGU] marine metagenome; sea ice
441
369
-
Glu
TTC
[ENA]
¢þ
>WENV183749587
PPFU01189182
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2560
2487
-
Glu
TTC
[ENA]
¢þ
>WENV170710305
LNFM01001504
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
20066
19994
-
Glu
TTC
[ENA]
¢þ
>WENV170712224
LNFM01011069
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
76254
76182
-
Glu
TTC
[ENA]
¢þ
>WENV170713520
LNFM01033654
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5992
5920
-
Glu
TTC
[ENA]
¢þ
>WENV170713583
LNFM01035190
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3995
3923
-
Glu
TTC
[ENA]
¢þ
>WENV170713591
LNFM01035309
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3201
3129
-
Glu
TTC
[ENA]
¢þ
>WENV170989101
MWVY01095234
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
29
102
+
Glu
TTC
[ENA]
¢þ
>C191073677
CP031115
Actinomycetota
Rubrobacter indicoceani SCSIO 08198 [CP031115]
1833267
1833340
+
Glu
TTC
-
¡û
>W09101193
AAEB02000027
Actinomycetota
Rubrobacter xylanophilus DSM 9941 [AAEB]
2990
2917
-
Glu
TTC
[ENA]
¡û
>W09104990
AAOL01000002
Actinomycetota
Acidothermus cellulolyticus 11B [AAOL]
426282
426355
+
Glu
TTC
[ENA]
¡û
>W09110029
ABUU01000009
Actinomycetota
Streptosporangium roseum DSM 43021 [ABUU]
97108
97035
-
Glu
TTC
[ENA]
¡û
>W141759616
JNZL01002066
Actinomycetota
Sphaerisporangium viridialbum [JNZL]
1662
1735
+
Glu
TTC
[ENA]
¡û
>W141759649
JNZM01001888
Actinomycetota
Microbispora rosea subsp. rosea [JNZM]
1815
1742
-
Glu
TTC
[ENA]
¡û
>W141759883
JNZQ01000047
Actinomycetota
Microbispora rosea subsp. nonnitritogenes [JNZQ]
12087
12014
-
Glu
TTC
[ENA]
¡û
>W141760752
JOAG01000013
Actinomycetota
Nonomuraea candida [JOAG]
60136
60061
-
Glu
TTC
[ENA]
¡û
>W141761080
JOAM01000866
Actinomycetota
Nonomuraea kuesteri [JOAM]
2894
2967
+
Glu
TTC
[ENA]
¡û
>W141765902
JODQ01000008
Actinomycetota
Herbidospora cretacea [JODQ]
265984
266057
+
Glu
TTC
[ENA]
¡û
>W141767389
JOEP01000001
Actinomycetota
Streptosporangium roseum [JOEP]
133269
133196
-
Glu
TTC
[ENA]
¡û
>W141767441
JOEQ01000003
Actinomycetota
Streptosporangium amethystogenes [JOEQ]
21513
21438
-
Glu
TTC
[ENA]
¡û
>W1910547915
FZOD01000109
Actinomycetota
Streptosporangium subroseum CGMCC 4.2132 [FZOD]
12326
12252
-
Glu
TTC
[ENA]
¡û
>W1911541338
OOHJ01000018
Actinomycetota
Actinomadura parvosata subsp. kistnae [OOHJ]
2032765
2032691
-
Glu
TTC
[ENA]
¡û
>W1911676962
QHHZ01000021
Actinomycetota
Nonomuraea sp. WAC 01424 [QHHZ]
144259
144332
+
Glu
TTC
[ENA]
¡û
>W1911813361
QZEY01000010
Actinomycetota
Bailinhaonella thermotolerans YIM 75507 [QZEY]
16099
16026
-
Glu
TTC
[ENA]
¡û
>W1810173950
PJOK01000074
Actinomycetota
Nonomuraea indica DRQ-2 [PJOK]
40095
40021
-
Glu
TTC
[ENA]
¡û
>W1810224086
POUA01000377
Actinomycetota
Spongiactinospora gelatinilytica 7K107 [POUA]
3226
3152
-
Glu
TTC
[ENA]
¡û
>W1810224254
POUD01000111
Actinomycetota
Nonomuraea aridisoli KC333 [POUD]
5074
5148
+
Glu
TTC
[ENA]
¡û
>W1810356862
PVNG01000008
Actinomycetota
Nonomuraea fuscirosea CGMCC 4.7104 [PVNG]
321457
321530
+
Glu
TTC
[ENA]
¡û
>W1810594510
QFZU02000031
Actinomycetota
Microbispora triticiradicis NEAU-HRDPA2-9 [QFZU]
138808
138881
+
Glu
TTC
[ENA]
¡û
>W1810701569
QMEY01000001
Actinomycetota
Spongiactinospora rosea LHW63015 [QMEY]
229327
229401
+
Glu
TTC
[ENA]
¡û
>W1810707253
QNFZ01000048
Actinomycetota
Nonomuraea lactucae NEAU-YG30 [QNFZ]
40678
40604
-
Glu
TTC
[ENA]
¡û
>W1810735356
QOIL01000029
Actinomycetota
Sphaerisporangium album CCTCC AA 208026 [QOIL]
106892
106819
-
Glu
TTC
[ENA]
¡û
>C151026216
CP007514
Actinomycetota
Rubrobacter radiotolerans RSPS-4 [CP007514]
1027051
1026978
-
Glu
TTC
[Ensembl]
¡û
>ENV09003218
ADGO01011822
Compost metagenome contig00001
448
375
-
Glu
TTC
[ENA]
¡û
>C10112429
CP001814
Actinomycetota
Streptosporangium roseum DSM 43021 [CP001814]
9997032
9996959
-
Glu
TTC
[Ensembl]
¡û
>C10113094
CP001874
Actinomycetota
Thermobispora bispora DSM 43833 [CP001874]
3937339
3937264
-
Glu
TTC
[Ensembl]
¡û
>W1511656761
LEKH01000003
Actinomycetota
Rubrobacter aplysinae RV113 [LEKH]
31527
31452
-
Glu
TTC
[ENA]
¡û
>W1610050918
BBGI01000066
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BBGI]
2133
2206
+
Glu
TTC
[ENA]
¡û
>W1610057145
BBXC01000010
Actinomycetota
Herbidospora sakaeratensis [BBXC]
583034
583107
+
Glu
TTC
[ENA]
¡û
>W1610057238
BBXD01000026
Actinomycetota
Herbidospora mongoliensis [BBXD]
116827
116900
+
Glu
TTC
[ENA]
¡û
>W1610057292
BBXE01000042
Actinomycetota
Herbidospora yilanensis [BBXE]
37025
37098
+
Glu
TTC
[ENA]
¡û
>W1610057347
BBXF01000008
Actinomycetota
Herbidospora daliensis [BBXF]
230612
230685
+
Glu
TTC
[ENA]
¡û
>W1610057408
BBXG01000024
Actinomycetota
Herbidospora cretacea [BBXG]
55020
54947
-
Glu
TTC
[ENA]
¡û
>W1610057555
BBYJ01000017
Actinomycetota
Microtetraspora malaysiensis [BBYJ]
244222
244295
+
Glu
TTC
[ENA]
¡û
>W1610057601
BBYK01000044
Actinomycetota
Microtetraspora fusca [BBYK]
92146
92073
-
Glu
TTC
[ENA]
¡û
>W1610057654
BBYL01000008
Actinomycetota
Microtetraspora glauca [BBYL]
381223
381150
-
Glu
TTC
[ENA]
¡û
>W1610057758
BBYM01000062
Actinomycetota
Microtetraspora niveoalba [BBYM]
4861
4788
-
Glu
TTC
[ENA]
¡û
>W1610057859
BBZG01000006
Actinomycetota
Nonomuraea pusilla NBRC 110462 [BBZG]
455469
455544
+
Glu
TTC
[ENA]
¡û
>W1610060640
BCBX01000046
Actinomycetota
Microbispora sp. GMKU363 [BCBX]
76695
76768
+
Glu
TTC
[ENA]
¡û
>W1610068449
BCRI01000212
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BCRI]
786
859
+
Glu
TTC
[ENA]
¡û
>W1610081022
BDCX01000017
Actinomycetota
Planomonospora sphaerica [BDCX]
203542
203615
+
Glu
TTC
[ENA]
¡û
>W1610526136
JPMW01000001
Actinomycetota
Planobispora rosea [JPMW]
7956848
7956775
-
Glu
TTC
[ENA]
¡û
>W1610551411
JYIJ01000019
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIJ]
623805
623880
+
Glu
TTC
[ENA]
¡û
>W1610551464
JYIK01001092
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIK]
2851
2926
+
Glu
TTC
[ENA]
¡û
>W1610578270
LAXD01000001
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [LAXD]
180299
180224
-
Glu
TTC
[ENA]
¡û
>W1610753598
LNEQ01000144
Actinomycetota
Actinobacteria bacterium Ga0077541 [LNEQ]
11712
11640
-
Glu
TTC
[ENA]
¡û
>W1710047317
BBGI01000066
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BBGI]
2133
2206
+
Glu
TTC
[ENA]
¡û
>W1710053844
BBXC01000010
Actinomycetota
Herbidospora sakaeratensis [BBXC]
583034
583107
+
Glu
TTC
[ENA]
¡û
>W1710053937
BBXD01000026
Actinomycetota
Herbidospora mongoliensis [BBXD]
116827
116900
+
Glu
TTC
[ENA]
¡û
>W1710053991
BBXE01000042
Actinomycetota
Herbidospora yilanensis [BBXE]
37025
37098
+
Glu
TTC
[ENA]
¡û
>W1710054046
BBXF01000008
Actinomycetota
Herbidospora daliensis [BBXF]
230612
230685
+
Glu
TTC
[ENA]
¡û
>W1710054107
BBXG01000024
Actinomycetota
Herbidospora cretacea [BBXG]
55020
54947
-
Glu
TTC
[ENA]
¡û
>W1710054254
BBYJ01000017
Actinomycetota
Microtetraspora malaysiensis [BBYJ]
244222
244295
+
Glu
TTC
[ENA]
¡û
>W1710054300
BBYK01000044
Actinomycetota
Microtetraspora fusca [BBYK]
92146
92073
-
Glu
TTC
[ENA]
¡û
>W1710054353
BBYL01000008
Actinomycetota
Microtetraspora glauca [BBYL]
381223
381150
-
Glu
TTC
[ENA]
¡û
>W1710054457
BBYM01000062
Actinomycetota
Microtetraspora niveoalba [BBYM]
4861
4788
-
Glu
TTC
[ENA]
¡û
>W1710054558
BBZG01000006
Actinomycetota
Nonomuraea pusilla NBRC 110462 [BBZG]
455469
455544
+
Glu
TTC
[ENA]
¡û
>W1710057895
BCBX01000046
Actinomycetota
Microbispora sp. GMKU363 [BCBX]
76695
76768
+
Glu
TTC
[ENA]
¡û
>W1710065822
BCRI01000212
Actinomycetota
Sphaerimonospora mesophila NBRC 14179 = JCM 3151 [BCRI]
786
859
+
Glu
TTC
[ENA]
¡û
>W1710079673
BDCX01000017
Actinomycetota
Planomonospora sphaerica [BDCX]
203542
203615
+
Glu
TTC
[ENA]
¡û
>W1710516378
FNCN01000030
Actinomycetota
Sinosporangium album [FNCN]
15119
15194
+
Glu
TTC
[ENA]
¡û
>W1710517497
FNDJ01000010
Actinomycetota
Nonomuraea jiangxiensis [FNDJ]
141742
141667
-
Glu
TTC
[ENA]
¡û
>W1710519892
FNFB01000046
Actinomycetota
Nonomuraea maritima [FNFB]
15288
15361
+
Glu
TTC
[ENA]
¡û
>W1710526586
FNKK01000002
Actinomycetota
Thermostaphylospora chromogena [FNKK]
1223224
1223151
-
Glu
TTC
[ENA]
¡û
>W1710539904
FNVT01000029
Actinomycetota
Nonomuraea solani [FNVT]
39780
39853
+
Glu
TTC
[ENA]
¡û
>W1710545112
FOBF01000040
Actinomycetota
Nonomuraea pusilla [FOBF]
7351
7276
-
Glu
TTC
[ENA]
¡û
>W1710553789
FOHX01000004
Actinomycetota
Nonomuraea wenchangensis [FOHX]
612663
612736
+
Glu
TTC
[ENA]
¡û
>W1710565072
FOQY01000027
Actinomycetota
Streptosporangium canum [FOQY]
38537
38464
-
Glu
TTC
[ENA]
¡û
>W1710597649
FTNI01000020
Actinomycetota
Microbispora rosea [FTNI]
14557
14630
+
Glu
TTC
[ENA]
¡û
>W1710605471
FWWX01000004
Actinomycetota
Rubrobacter radiotolerans DSM 5868 [FWWX]
1027947
1027874
-
Glu
TTC
[ENA]
¡û
>W1710627374
JPMW01000001
Actinomycetota
Planobispora rosea [JPMW]
7956848
7956775
-
Glu
TTC
[ENA]
¡û
>W1710661684
JYIJ01000019
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIJ]
623805
623880
+
Glu
TTC
[ENA]
¡û
>W1710661737
JYIK01001092
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIK]
2851
2926
+
Glu
TTC
[ENA]
¡û
>W1710697143
LAXD01000001
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [LAXD]
180299
180224
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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