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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.286291 (88 seq.)
>WENV180010007
FLSC01221450
[FLSC] metagenome; saliva
1
77
+
Arg
TCG
[ENA]
¢þ
>WENV180012017
FLSK01132065
[FLSK] metagenome; saliva
323
247
-
Arg
TCG
[ENA]
¢þ
>W141000251
ACIF01000180
Fusobacteriota
Fusobacterium periodonticum D10 [ACIF]
4042
4118
+
Arg
TCG
[ENA]
¡û
>WENV180708130
ODFJ01000322
[ODFJ] human metagenome; G_DNA_Tongue dorsum
21297
21221
-
Arg
TCG
[ENA]
¢þ
>WENV180719869
ODGJ01008108
[ODGJ] human metagenome; G_DNA_Tongue dorsum
3436
3512
+
Arg
TCG
[ENA]
¢þ
>WENV180721064
ODGK01004633
[ODGK] human metagenome; G_DNA_Palatine Tonsils
746
670
-
Arg
TCG
[ENA]
¢þ
>WENV180724068
ODGR01000049
[ODGR] human metagenome; G_DNA_Tongue dorsum
17841
17917
+
Arg
TCG
[ENA]
¢þ
>WENV180739353
ODHD01043330
[ODHD] human metagenome; G_DNA_Supragingival plaque
104
180
+
Arg
TCG
[ENA]
¢þ
>WENV180757357
ODHW01000259
[ODHW] human metagenome; G_DNA_Tongue dorsum
17560
17636
+
Arg
TCG
[ENA]
¢þ
>WENV180769438
ODIG01072339
[ODIG] human metagenome; G_DNA_Tongue dorsum
648
572
-
Arg
TCG
[ENA]
¢þ
>WENV180769702
ODIG01136432
[ODIG] human metagenome; G_DNA_Tongue dorsum
374
298
-
Arg
TCG
[ENA]
¢þ
>WENV180773909
ODIJ01004228
[ODIJ] human metagenome; G_DNA_Tongue dorsum
5475
5551
+
Arg
TCG
[ENA]
¢þ
>WENV180775687
ODIK01002626
[ODIK] human metagenome; G_DNA_Tongue dorsum
5449
5525
+
Arg
TCG
[ENA]
¢þ
>WENV180779235
ODIN01001231
[ODIN] human metagenome; G_DNA_Throat
5514
5438
-
Arg
TCG
[ENA]
¢þ
>WENV180783235
ODIQ01003080
[ODIQ] human metagenome; G_DNA_Tongue dorsum
1675
1599
-
Arg
TCG
[ENA]
¢þ
>WENV180792596
ODIW01000962
[ODIW] human metagenome; G_DNA_Tongue dorsum
1853
1777
-
Arg
TCG
[ENA]
¢þ
>WENV180806007
ODJH01000991
[ODJH] human metagenome; G_DNA_Tongue dorsum
1940
1864
-
Arg
TCG
[ENA]
¢þ
>WENV180809493
ODJK01020914
[ODJK] human metagenome; G_DNA_Subgingival plaque
271
347
+
Arg
TCG
[ENA]
¢þ
>WENV180810843
ODJM01001437
[ODJM] human metagenome; G_DNA_Buccal mucosa
1669
1593
-
Arg
TCG
[ENA]
¢þ
>WENV180815857
ODJP01002159
[ODJP] human metagenome; G_DNA_Tongue dorsum
10338
10414
+
Arg
TCG
[ENA]
¢þ
>WENV180819787
ODJR01000510
[ODJR] human metagenome; G_DNA_Tongue dorsum
4254
4330
+
Arg
TCG
[ENA]
¢þ
>WENV180821679
ODJS01034457
[ODJS] human metagenome; G_DNA_Tongue dorsum
616
540
-
Arg
TCG
[ENA]
¢þ
>WENV180830522
ODKB01004952
[ODKB] human metagenome; G_DNA_Tongue dorsum
4010
3934
-
Arg
TCG
[ENA]
¢þ
>WENV180854593
ODKX01006248
[ODKX] human metagenome; G_DNA_Tongue dorsum
77
1
-
Arg
TCG
[ENA]
¢þ
>WENV180858936
ODLC01079740
[ODLC] human metagenome; G_DNA_Tongue dorsum
129
205
+
Arg
TCG
[ENA]
¢þ
>WENV180861094
ODLE01000851
[ODLE] human metagenome; G_DNA_Tongue dorsum
7909
7833
-
Arg
TCG
[ENA]
¢þ
>WENV180863910
ODLH01004105
[ODLH] human metagenome; G_DNA_Tongue dorsum
4608
4684
+
Arg
TCG
[ENA]
¢þ
>WENV180866115
ODLJ01004758
[ODLJ] human metagenome; G_DNA_Tongue dorsum
77
1
-
Arg
TCG
[ENA]
¢þ
>WENV180872842
ODLP01000122
[ODLP] human metagenome; G_DNA_Tongue dorsum
28941
28865
-
Arg
TCG
[ENA]
¢þ
>WENV180883545
ODMC01007714
[ODMC] human metagenome; G_DNA_Tongue dorsum
92
16
-
Arg
TCG
[ENA]
¢þ
>WENV180897492
ODNI01030238
[ODNI] human metagenome; G_DNA_Tongue dorsum
109
185
+
Arg
TCG
[ENA]
¢þ
>WENV180900005
ODOJ01000237
[ODOJ] human metagenome; G_DNA_Tongue dorsum
17727
17803
+
Arg
TCG
[ENA]
¢þ
>WENV180902343
ODOK01041064
[ODOK] human metagenome; G_DNA_Tongue dorsum
526
602
+
Arg
TCG
[ENA]
¢þ
>WENV180917759
ODTD01107739
[ODTD] human metagenome; G_DNA_Tongue dorsum
240
164
-
Arg
TCG
[ENA]
¢þ
>WENV180920190
ODTH01001989
[ODTH] human metagenome; G_DNA_Tongue dorsum
5514
5438
-
Arg
TCG
[ENA]
¢þ
>WENV180932470
ODTP01067293
[ODTP] human metagenome; G_DNA_Tongue dorsum
502
426
-
Arg
TCG
[ENA]
¢þ
>WENV180945974
ODUD01001690
[ODUD] human metagenome; G_DNA_Tongue dorsum
509
433
-
Arg
TCG
[ENA]
¢þ
>WENV180950061
ODUG01071425
[ODUG] human metagenome; G_DNA_Tongue dorsum
7
83
+
Arg
TCG
[ENA]
¢þ
>WENV180954626
ODUJ01005058
[ODUJ] human metagenome; G_DNA_Tongue dorsum
4438
4514
+
Arg
TCG
[ENA]
¢þ
>WENV180959797
ODUM01003444
[ODUM] human metagenome; G_DNA_Tongue dorsum
2188
2112
-
Arg
TCG
[ENA]
¢þ
>WENV180968900
ODUT01109756
[ODUT] human metagenome; G_DNA_Tongue dorsum
172
96
-
Arg
TCG
[ENA]
¢þ
>WENV180991226
ODVN01028547
[ODVN] human metagenome; G_DNA_Tongue dorsum
626
550
-
Arg
TCG
[ENA]
¢þ
>WENV180991992
ODVO01017741
[ODVO] human metagenome; G_DNA_Buccal mucosa
120
44
-
Arg
TCG
[ENA]
¢þ
>WENV181001815
ODVW01018462
[ODVW] human metagenome; G_DNA_Buccal mucosa
425
349
-
Arg
TCG
[ENA]
¢þ
>WENV181010611
ODWH01099441
[ODWH] human metagenome; G_DNA_Buccal mucosa
64
140
+
Arg
TCG
[ENA]
¢þ
>WENV181013408
ODWN01000537
[ODWN] human metagenome; G_DNA_Tongue dorsum
19664
19740
+
Arg
TCG
[ENA]
¢þ
>WENV181016645
ODWR01003652
[ODWR] human metagenome; G_DNA_Tongue dorsum
1494
1418
-
Arg
TCG
[ENA]
¢þ
>WENV181027742
ODXD01040502
[ODXD] human metagenome; G_DNA_Buccal mucosa
36
112
+
Arg
TCG
[ENA]
¢þ
>WENV181033323
ODXN01005143
[ODXN] human metagenome; G_DNA_Tongue dorsum
4509
4585
+
Arg
TCG
[ENA]
¢þ
>WENV181038994
ODXQ01007874
[ODXQ] human metagenome; G_DNA_Tongue dorsum
77
1
-
Arg
TCG
[ENA]
¢þ
>WENV181041050
ODXS01003544
[ODXS] human metagenome; G_DNA_Tongue dorsum
4653
4729
+
Arg
TCG
[ENA]
¢þ
>WENV181044205
ODXV01004371
[ODXV] human metagenome; G_DNA_Tongue dorsum
1616
1540
-
Arg
TCG
[ENA]
¢þ
>WENV181045511
ODXW01000341
[ODXW] human metagenome; G_DNA_Tongue dorsum
6124
6200
+
Arg
TCG
[ENA]
¢þ
>WENV181052209
ODYE01048593
[ODYE] human metagenome; G_DNA_Tongue dorsum
13
89
+
Arg
TCG
[ENA]
¢þ
>WENV181059340
ODYM01000706
[ODYM] human metagenome; G_DNA_Tongue dorsum
2784
2708
-
Arg
TCG
[ENA]
¢þ
>WENV181060131
ODYM01045261
[ODYM] human metagenome; G_DNA_Tongue dorsum
466
390
-
Arg
TCG
[ENA]
¢þ
>WENV181064959
ODYP01172261
[ODYP] human metagenome; G_DNA_Supragingival plaque
289
213
-
Arg
TCG
[ENA]
¢þ
>WENV181068815
ODZZ01002922
[ODZZ] human metagenome; G_DNA_Tongue dorsum
5455
5531
+
Arg
TCG
[ENA]
¢þ
>WENV181074421
OEAO01007944
[OEAO] human metagenome; G_DNA_Tongue dorsum
3804
3880
+
Arg
TCG
[ENA]
¢þ
>WENV181078141
OEAQ01009832
[OEAQ] human metagenome; G_DNA_Buccal mucosa
107
31
-
Arg
TCG
[ENA]
¢þ
>WENV181087209
OEAY01017692
[OEAY] human metagenome; G_DNA_Tongue dorsum
750
826
+
Arg
TCG
[ENA]
¢þ
>WENV181087473
OEAY01048689
[OEAY] human metagenome; G_DNA_Tongue dorsum
6
82
+
Arg
TCG
[ENA]
¢þ
>WENV181096163
OEBY01063106
[OEBY] human metagenome; G_DNA_Tongue dorsum
332
256
-
Arg
TCG
[ENA]
¢þ
>WENV181097953
OECA01049601
[OECA] human metagenome; G_DNA_Tongue dorsum
522
446
-
Arg
TCG
[ENA]
¢þ
>WENV181102712
OECT01008372
[OECT] human metagenome; G_DNA_Tongue dorsum
80
4
-
Arg
TCG
[ENA]
¢þ
>WENV181108858
OEEJ01000772
[OEEJ] human metagenome; G_DNA_Tongue dorsum
9743
9819
+
Arg
TCG
[ENA]
¢þ
>WENV181112952
OEEL01006855
[OEEL] human metagenome; G_DNA_Tongue dorsum
551
475
-
Arg
TCG
[ENA]
¢þ
>WENV181114776
OEEO01005056
[OEEO] human metagenome; G_DNA_Supragingival plaque
3976
4052
+
Arg
TCG
[ENA]
¢þ
>WENV181129572
OEFX01046844
[OEFX] human metagenome; G_DNA_Tongue dorsum
414
338
-
Arg
TCG
[ENA]
¢þ
>WENV181139222
OEGN01004370
[OEGN] human metagenome; G_DNA_Tongue dorsum
4482
4558
+
Arg
TCG
[ENA]
¢þ
>WENV181141947
OEGT01037927
[OEGT] human metagenome; G_DNA_Throat
625
549
-
Arg
TCG
[ENA]
¢þ
>WENV181153294
OEIA01045865
[OEIA] human metagenome; G_DNA_Supragingival plaque
696
620
-
Arg
TCG
[ENA]
¢þ
>WENV181156745
OEIE01086701
[OEIE] human metagenome; G_DNA_Supragingival plaque
229
305
+
Arg
TCG
[ENA]
¢þ
>WENV181160920
OEIK01061846
[OEIK] human metagenome; G_DNA_Supragingival plaque
464
388
-
Arg
TCG
[ENA]
¢þ
>WENV181502110
OGGI01005026
[OGGI] metagenome; Human gut stool
5561
5637
+
Arg
TCG
[ENA]
¢þ
>WENV181548097
OGIJ01016569
[OGIJ] metagenome; Human gut stool
359
435
+
Arg
TCG
[ENA]
¢þ
>WENV183025047
OLFT01003327
[OLFT] human gut metagenome; faeces
10229
10305
+
Arg
TCG
[ENA]
¢þ
>C181104064
CP024700
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1263 [CP024700]
2144113
2144189
+
Arg
TCG
-
¡û
>C181104102
CP024701
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1277 [CP024701]
1331713
1331789
+
Arg
TCG
-
¡û
>C181104189
CP024702
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1282 [CP024702]
478731
478655
-
Arg
TCG
-
¡û
>C181104224
CP024703
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2305 [CP024703]
1993131
1993055
-
Arg
TCG
-
¡û
>C181104245
CP024704
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2555 [CP024704]
2041555
2041631
+
Arg
TCG
-
¡û
>C181104315
CP024705
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2653 [CP024705]
2024198
2024122
-
Arg
TCG
-
¡û
>C181104870
CP024731
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1262 [CP024731]
215784
215708
-
Arg
TCG
-
¡û
>C181161196
CP028108
Fusobacteriota
Fusobacterium periodonticum 2_1_31 [CP028108]
1257358
1257434
+
Arg
TCG
-
¡û
>W09118552
ACDC01000016
Fusobacteriota
Fusobacterium periodonticum 2_1_31 [ACDC]
1609
1533
-
Arg
TCG
[ENA]
¡û
>W1810084277
PEQX01000001
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1321 [PEQX]
287616
287692
+
Arg
TCG
[ENA]
¡û
>W1810084357
PEQY01000001
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1259 [PEQY]
1444846
1444770
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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