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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.286380 (134 seq.)
>W131204934
ATCI01000021
Bacteroidota
Capnocytophaga sp. oral taxon 336 oral taxon 336 str. F0502 [ATCI]
25003
25079
+
Arg
TCT
[ENA]
¡û
>W141042751
AMET01000159
Bacteroidota
Capnocytophaga sp. oral taxon 332 oral taxon 332 str. F0381 [AMET]
11577
11501
-
Arg
TCT
[ENA]
¡û
>W141042765
AMEU01000060
Bacteroidota
Capnocytophaga sp. oral taxon 326 oral taxon 326 str. F0382 [AMEU]
11130
11054
-
Arg
TCT
[ENA]
¡û
>W141042815
AMEV01000091
Bacteroidota
Capnocytophaga sp. oral taxon 324 oral taxon 324 str. F0483 [AMEV]
11704
11628
-
Arg
TCT
[ENA]
¡û
>WENV180698170
ODDE01059408
[ODDE] human metagenome; G_DNA_Supragingival plaque
205
279
+
Arg
TCT
[ENA]
¢þ
>WENV180718486
ODGG01004510
[ODGG] human metagenome; G_DNA_Buccal mucosa
219
145
-
Arg
TCT
[ENA]
¢þ
>WENV180719933
ODGJ01010667
[ODGJ] human metagenome; G_DNA_Tongue dorsum
2146
2072
-
Arg
TCT
[ENA]
¢þ
>WENV180726058
ODGS01019010
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
187
261
+
Arg
TCT
[ENA]
¢þ
>WENV180727415
ODGU01005027
[ODGU] human metagenome; G_DNA_Supragingival plaque
5305
5231
-
Arg
TCT
[ENA]
¢þ
>WENV180732267
ODGY01000058
[ODGY] human metagenome; G_DNA_Supragingival plaque
16162
16236
+
Arg
TCT
[ENA]
¢þ
>WENV180732287
ODGY01000087
[ODGY] human metagenome; G_DNA_Supragingival plaque
11105
11179
+
Arg
TCT
[ENA]
¢þ
>WENV180735857
ODHB01001125
[ODHB] human metagenome; G_DNA_Supragingival plaque
7510
7584
+
Arg
TCT
[ENA]
¢þ
>WENV180738544
ODHD01000080
[ODHD] human metagenome; G_DNA_Supragingival plaque
23514
23588
+
Arg
TCT
[ENA]
¢þ
>WENV180738587
ODHD01000128
[ODHD] human metagenome; G_DNA_Supragingival plaque
12043
11969
-
Arg
TCT
[ENA]
¢þ
>WENV180738700
ODHD01000333
[ODHD] human metagenome; G_DNA_Supragingival plaque
271
197
-
Arg
TCT
[ENA]
¢þ
>WENV180739451
ODHD01104518
[ODHD] human metagenome; G_DNA_Supragingival plaque
75
1
-
Arg
TCT
[ENA]
¢þ
>WENV180755300
ODHU01080506
[ODHU] human metagenome; G_DNA_Supragingival plaque
105
179
+
Arg
TCT
[ENA]
¢þ
>WENV180764910
ODIB01004869
[ODIB] human metagenome; G_DNA_Supragingival plaque
1310
1236
-
Arg
TCT
[ENA]
¢þ
>WENV180767447
ODIG01000055
[ODIG] human metagenome; G_DNA_Tongue dorsum
68772
68846
+
Arg
TCT
[ENA]
¢þ
>WENV180776804
ODIK01149967
[ODIK] human metagenome; G_DNA_Tongue dorsum
183
109
-
Arg
TCT
[ENA]
¢þ
>WENV180778112
ODIM01000636
[ODIM] human metagenome; G_DNA_Supragingival plaque
254
328
+
Arg
TCT
[ENA]
¢þ
>WENV180779122
ODIN01000588
[ODIN] human metagenome; G_DNA_Throat
702
776
+
Arg
TCT
[ENA]
¢þ
>WENV180782141
ODIP01025597
[ODIP] human metagenome; G_DNA_Supragingival plaque
115
189
+
Arg
TCT
[ENA]
¢þ
>WENV180784088
ODIQ01130504
[ODIQ] human metagenome; G_DNA_Tongue dorsum
32
106
+
Arg
TCT
[ENA]
¢þ
>WENV180787092
ODIS01001249
[ODIS] human metagenome; G_DNA_Supragingival plaque
12186
12261
+
Arg
TCT
[ENA]
¢þ
>WENV180787893
ODIS01020144
[ODIS] human metagenome; G_DNA_Supragingival plaque
1421
1347
-
Arg
TCT
[ENA]
¢þ
>WENV180795658
ODJB01000109
[ODJB] human metagenome; G_DNA_Supragingival plaque
45984
45910
-
Arg
TCT
[ENA]
¢þ
>WENV180805162
ODJG01076419
[ODJG] human metagenome; G_DNA_Supragingival plaque
356
430
+
Arg
TCT
[ENA]
¢þ
>WENV180806412
ODJH01017376
[ODJH] human metagenome; G_DNA_Tongue dorsum
692
618
-
Arg
TCT
[ENA]
¢þ
>WENV180809786
ODJK01046746
[ODJK] human metagenome; G_DNA_Subgingival plaque
123
49
-
Arg
TCT
[ENA]
¢þ
>WENV180813405
ODJO01000611
[ODJO] human metagenome; G_DNA_Supragingival plaque
10411
10485
+
Arg
TCT
[ENA]
¢þ
>WENV180816827
ODJP01067305
[ODJP] human metagenome; G_DNA_Tongue dorsum
322
247
-
Arg
TCT
[ENA]
¢þ
>WENV180822956
ODJW01001216
[ODJW] human metagenome; G_DNA_Supragingival plaque
3737
3811
+
Arg
TCT
[ENA]
¢þ
>WENV180824852
ODJX01071084
[ODJX] human metagenome; G_DNA_Supragingival plaque
75
1
-
Arg
TCT
[ENA]
¢þ
>WENV180831391
ODKB01140082
[ODKB] human metagenome; G_DNA_Tongue dorsum
20
94
+
Arg
TCT
[ENA]
¢þ
>WENV180831939
ODKC01000266
[ODKC] human metagenome; G_DNA_Supragingival plaque
50035
50110
+
Arg
TCT
[ENA]
¢þ
>WENV180832040
ODKC01000374
[ODKC] human metagenome; G_DNA_Supragingival plaque
39636
39711
+
Arg
TCT
[ENA]
¢þ
>WENV180832562
ODKC01002280
[ODKC] human metagenome; G_DNA_Supragingival plaque
9929
9855
-
Arg
TCT
[ENA]
¢þ
>WENV180832637
ODKC01002846
[ODKC] human metagenome; G_DNA_Supragingival plaque
8625
8699
+
Arg
TCT
[ENA]
¢þ
>WENV180832754
ODKC01003888
[ODKC] human metagenome; G_DNA_Supragingival plaque
2309
2235
-
Arg
TCT
[ENA]
¢þ
>WENV180833601
ODKC01127763
[ODKC] human metagenome; G_DNA_Supragingival plaque
90
165
+
Arg
TCT
[ENA]
¢þ
>WENV180833744
ODKD01000165
[ODKD] human metagenome; G_DNA_Supragingival plaque
378
304
-
Arg
TCT
[ENA]
¢þ
>WENV180834321
ODKD01011550
[ODKD] human metagenome; G_DNA_Supragingival plaque
1372
1446
+
Arg
TCT
[ENA]
¢þ
>WENV180834519
ODKD01042357
[ODKD] human metagenome; G_DNA_Supragingival plaque
277
203
-
Arg
TCT
[ENA]
¢þ
>WENV180834817
ODKE01000013
[ODKE] human metagenome; G_DNA_Supragingival plaque
56020
55946
-
Arg
TCT
[ENA]
¢þ
>WENV180842060
ODKK01094346
[ODKK] human metagenome; G_DNA_Buccal mucosa
35
109
+
Arg
TCT
[ENA]
¢þ
>WENV180844450
ODKN01123523
[ODKN] human metagenome; G_DNA_Supragingival plaque
257
331
+
Arg
TCT
[ENA]
¢þ
>WENV180847303
ODKT01060804
[ODKT] human metagenome; G_DNA_Supragingival plaque
91
165
+
Arg
TCT
[ENA]
¢þ
>WENV180847789
ODKT01174577
[ODKT] human metagenome; G_DNA_Supragingival plaque
257
331
+
Arg
TCT
[ENA]
¢þ
>WENV180848040
ODKT01357774
[ODKT] human metagenome; G_DNA_Supragingival plaque
92
166
+
Arg
TCT
[ENA]
¢þ
>WENV180848045
ODKT01358131
[ODKT] human metagenome; G_DNA_Supragingival plaque
75
1
-
Arg
TCT
[ENA]
¢þ
>WENV180853303
ODKW01064057
[ODKW] human metagenome; G_DNA_Tongue dorsum
125
51
-
Arg
TCT
[ENA]
¢þ
>WENV180860457
ODLD01088684
[ODLD] human metagenome; G_DNA_Supragingival plaque
254
328
+
Arg
TCT
[ENA]
¢þ
>WENV180891402
ODMQ01000017
[ODMQ] human metagenome; G_DNA_Supragingival plaque
12436
12362
-
Arg
TCT
[ENA]
¢þ
>WENV180901070
ODOJ01029837
[ODOJ] human metagenome; G_DNA_Tongue dorsum
647
573
-
Arg
TCT
[ENA]
¢þ
>WENV180923635
ODTK01000058
[ODTK] human metagenome; G_DNA_Supragingival plaque
60804
60878
+
Arg
TCT
[ENA]
¢þ
>WENV180931178
ODTP01001815
[ODTP] human metagenome; G_DNA_Tongue dorsum
1413
1487
+
Arg
TCT
[ENA]
¢þ
>WENV180934162
ODTR01036831
[ODTR] human metagenome; G_DNA_Supragingival plaque
131
56
-
Arg
TCT
[ENA]
¢þ
>WENV180938355
ODTX01001563
[ODTX] human metagenome; G_DNA_Supragingival plaque
1395
1469
+
Arg
TCT
[ENA]
¢þ
>WENV180943657
ODUC01001451
[ODUC] human metagenome; G_DNA_Supragingival plaque
550
624
+
Arg
TCT
[ENA]
¢þ
>WENV180947978
ODUG01000139
[ODUG] human metagenome; G_DNA_Tongue dorsum
777
851
+
Arg
TCT
[ENA]
¢þ
>WENV180955407
ODUJ01112435
[ODUJ] human metagenome; G_DNA_Tongue dorsum
75
1
-
Arg
TCT
[ENA]
¢þ
>WENV180958421
ODUL01004276
[ODUL] human metagenome; G_DNA_Supragingival plaque
223
298
+
Arg
TCT
[ENA]
¢þ
>WENV180973999
ODUW01040088
[ODUW] human metagenome; G_DNA_Supragingival plaque
123
49
-
Arg
TCT
[ENA]
¢þ
>WENV180977444
ODUZ01000919
[ODUZ] human metagenome; G_DNA_Tongue dorsum
13343
13269
-
Arg
TCT
[ENA]
¢þ
>WENV180982087
ODVE01139936
[ODVE] human metagenome; G_DNA_Supragingival plaque
112
38
-
Arg
TCT
[ENA]
¢þ
>WENV180983080
ODVF01003268
[ODVF] human metagenome; G_DNA_Supragingival plaque
4731
4805
+
Arg
TCT
[ENA]
¢þ
>WENV180985001
ODVJ01000305
[ODVJ] human metagenome; G_DNA_Tongue dorsum
358
432
+
Arg
TCT
[ENA]
¢þ
>WENV180991357
ODVN01052878
[ODVN] human metagenome; G_DNA_Tongue dorsum
202
276
+
Arg
TCT
[ENA]
¢þ
>WENV181002432
ODVX01000347
[ODVX] human metagenome; G_DNA_Supragingival plaque
75
1
-
Arg
TCT
[ENA]
¢þ
>WENV181004151
ODVX01114529
[ODVX] human metagenome; G_DNA_Supragingival plaque
256
330
+
Arg
TCT
[ENA]
¢þ
>WENV181005838
ODWA01000024
[ODWA] human metagenome; G_DNA_Buccal mucosa
12038
11964
-
Arg
TCT
[ENA]
¢þ
>WENV181007616
ODWE01000298
[ODWE] human metagenome; G_DNA_Supragingival plaque
142
68
-
Arg
TCT
[ENA]
¢þ
>WENV181009637
ODWE01124592
[ODWE] human metagenome; G_DNA_Supragingival plaque
111
37
-
Arg
TCT
[ENA]
¢þ
>WENV181009640
ODWE01124995
[ODWE] human metagenome; G_DNA_Supragingival plaque
233
308
+
Arg
TCT
[ENA]
¢þ
>WENV181012562
ODWK01001395
[ODWK] human metagenome; G_DNA_Supragingival plaque
357
431
+
Arg
TCT
[ENA]
¢þ
>WENV181020317
ODWU01112084
[ODWU] human metagenome; G_DNA_Supragingival plaque
254
328
+
Arg
TCT
[ENA]
¢þ
>WENV181029257
ODXF01000036
[ODXF] human metagenome; G_DNA_Supragingival plaque
61360
61434
+
Arg
TCT
[ENA]
¢þ
>WENV181034229
ODXN01134226
[ODXN] human metagenome; G_DNA_Tongue dorsum
7
81
+
Arg
TCT
[ENA]
¢þ
>WENV181043024
ODXU01029424
[ODXU] human metagenome; G_DNA_Buccal mucosa
131
56
-
Arg
TCT
[ENA]
¢þ
>WENV181043630
ODXV01000238
[ODXV] human metagenome; G_DNA_Tongue dorsum
125
51
-
Arg
TCT
[ENA]
¢þ
>WENV181049418
ODYD01000153
[ODYD] human metagenome; G_DNA_Supragingival plaque
273
199
-
Arg
TCT
[ENA]
¢þ
>WENV181050577
ODYD01028030
[ODYD] human metagenome; G_DNA_Supragingival plaque
112
38
-
Arg
TCT
[ENA]
¢þ
>WENV181052921
ODYG01088896
[ODYG] human metagenome; G_DNA_Tongue dorsum
203
129
-
Arg
TCT
[ENA]
¢þ
>WENV181059435
ODYM01001060
[ODYM] human metagenome; G_DNA_Tongue dorsum
9177
9251
+
Arg
TCT
[ENA]
¢þ
>WENV181068124
ODZI01130230
[ODZI] human metagenome; G_DNA_Supragingival plaque
112
38
-
Arg
TCT
[ENA]
¢þ
>WENV181070016
OEAE01000125
[OEAE] human metagenome; G_DNA_Supragingival plaque
7574
7500
-
Arg
TCT
[ENA]
¢þ
>WENV181070436
OEAE01001533
[OEAE] human metagenome; G_DNA_Supragingival plaque
374
300
-
Arg
TCT
[ENA]
¢þ
>WENV181076434
OEAP01005342
[OEAP] human metagenome; G_DNA_Supragingival plaque
3838
3764
-
Arg
TCT
[ENA]
¢þ
>WENV181078636
OEAS01000202
[OEAS] human metagenome; G_DNA_Supragingival plaque
42736
42810
+
Arg
TCT
[ENA]
¢þ
>WENV181083663
OEAV01016710
[OEAV] human metagenome; G_DNA_Supragingival plaque
695
621
-
Arg
TCT
[ENA]
¢þ
>WENV181084625
OEAX01000003
[OEAX] human metagenome; G_DNA_Tongue dorsum
224232
224158
-
Arg
TCT
[ENA]
¢þ
>WENV181091430
OEBC01032668
[OEBC] human metagenome; G_DNA_Supragingival plaque
592
666
+
Arg
TCT
[ENA]
¢þ
>WENV181098184
OECA01116834
[OECA] human metagenome; G_DNA_Tongue dorsum
138
64
-
Arg
TCT
[ENA]
¢þ
>WENV181108099
OEEI01086488
[OEEI] human metagenome; G_DNA_Supragingival plaque
254
328
+
Arg
TCT
[ENA]
¢þ
>WENV181121160
OEFL01000807
[OEFL] human metagenome; G_DNA_Supragingival plaque
75
1
-
Arg
TCT
[ENA]
¢þ
>WENV181123600
OEFQ01000069
[OEFQ] human metagenome; G_DNA_Supragingival plaque
123
49
-
Arg
TCT
[ENA]
¢þ
>WENV181136123
OEGI01000768
[OEGI] human metagenome; G_DNA_Supragingival plaque
11310
11236
-
Arg
TCT
[ENA]
¢þ
>WENV181137562
OEGJ01006845
[OEGJ] human metagenome; G_DNA_Supragingival plaque
1637
1563
-
Arg
TCT
[ENA]
¢þ
>WENV181140697
OEGT01000059
[OEGT] human metagenome; G_DNA_Throat
14389
14315
-
Arg
TCT
[ENA]
¢þ
>WENV181143117
OEHM01000124
[OEHM] human metagenome; G_DNA_Supragingival plaque
529
455
-
Arg
TCT
[ENA]
¢þ
>WENV181150296
OEHW01001397
[OEHW] human metagenome; G_DNA_Tongue dorsum
13349
13275
-
Arg
TCT
[ENA]
¢þ
>WENV181152510
OEIA01001886
[OEIA] human metagenome; G_DNA_Supragingival plaque
799
873
+
Arg
TCT
[ENA]
¢þ
>WENV181155796
OEIE01000072
[OEIE] human metagenome; G_DNA_Supragingival plaque
721
647
-
Arg
TCT
[ENA]
¢þ
>WENV181155938
OEIE01000886
[OEIE] human metagenome; G_DNA_Supragingival plaque
1527
1601
+
Arg
TCT
[ENA]
¢þ
>WENV181160458
OEIK01009022
[OEIK] human metagenome; G_DNA_Supragingival plaque
2640
2714
+
Arg
TCT
[ENA]
¢þ
>WENV181177227
OEJS01000190
[OEJS] human metagenome; G_DNA_Supragingival plaque
15152
15226
+
Arg
TCT
[ENA]
¢þ
>WENV181180146
OEJT01091516
[OEJT] human metagenome; G_DNA_Supragingival plaque
254
328
+
Arg
TCT
[ENA]
¢þ
>WENV181180417
OEJU01000060
[OEJU] human metagenome; G_DNA_Supragingival plaque
14746
14672
-
Arg
TCT
[ENA]
¢þ
>WENV181181515
OEJU01105526
[OEJU] human metagenome; G_DNA_Supragingival plaque
75
1
-
Arg
TCT
[ENA]
¢þ
>WENV181182155
OEJV01003125
[OEJV] human metagenome; G_DNA_Supragingival plaque
5402
5328
-
Arg
TCT
[ENA]
¢þ
>WENV182640044
OJLB01000100
[OJLB] metagenome; surface
59069
58995
-
Arg
TCT
[ENA]
¢þ
>WENV183711491
PDWI01071093
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2690
2616
-
Arg
TCT
[ENA]
¢þ
>WENV183715927
PDWI01274385
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
173
247
+
Arg
TCT
[ENA]
¢þ
>WENV170692999
LGOV01059278
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
46
120
+
Arg
TCT
[ENA]
¢þ
>WENV170698081
LGVF01254100
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1719
1645
-
Arg
TCT
[ENA]
¢þ
>C181055639
CP022022
Bacteroidota
Capnocytophaga endodontalis ChDC OS43 [CP022022]
2254717
2254643
-
Arg
TCT
-
¡û
>C181063546
CP022379
Bacteroidota
Capnocytophaga sputigena D1179 [CP022379]
346617
346543
-
Arg
TCT
-
¡û
>C181063726
CP022383
Bacteroidota
Capnocytophaga sputigena H4486 [CP022383]
502454
502380
-
Arg
TCT
-
¡û
>C181063753
CP022384
Bacteroidota
Capnocytophaga leadbetteri H6253 [CP022384]
2255142
2255216
+
Arg
TCT
-
¡û
>C181063819
CP022385
Bacteroidota
Capnocytophaga sputigena KC1668 [CP022385]
417720
417646
-
Arg
TCT
-
¡û
>C181147997
CP027229
Bacteroidota
Capnocytophaga sp. oral taxon 878 F0545 [CP027229]
995204
995278
+
Arg
TCT
-
¡û
>C181148093
CP027232
Bacteroidota
Capnocytophaga sp. oral taxon 864 F0512 [CP027232]
577127
577201
+
Arg
TCT
-
¡û
>C191212292
LR134489
Bacteroidota
Capnocytophaga sputigena NCTC11097 [LR134489]
376413
376339
-
Arg
TCT
-
¡û
>W09114697
ABZV01000017
Bacteroidota
Capnocytophaga sputigena Capno [ABZV]
50190
50266
+
Arg
TCT
[ENA]
¡û
>W1910919091
NIBW01000002
Bacteroidota
Capnocytophaga sputigena H6490 [NIBW]
885051
884977
-
Arg
TCT
[ENA]
¡û
>W1810503610
QBKG01000021
Bacteroidota
Capnocytophaga leadbetteri DSM 22902 [QBKG]
901
975
+
Arg
TCT
[ENA]
¡û
>C151095902
CP012589
Bacteroidota
Capnocytophaga sp. oral taxon 323 F0383 [CP012589]
455939
455863
-
Arg
TCT
-
¡û
>W1511453355
JVFB01000036
Bacteroidota
Capnocytophaga ochracea 490_CAPN [JVFB]
23955
24031
+
Arg
TCT
[ENA]
¡û
>W11141864
AEOH01000012
Bacteroidota
Capnocytophaga ochracea F0287 [AEOH]
33621
33545
-
Arg
TCT
[ENA]
¡û
>W11163158
AFHP01000020
Bacteroidota
Capnocytophaga sp. oral taxon 329 oral taxon 329 str. F0087 [AFHP]
7707
7783
+
Arg
TCT
[ENA]
¡û
>W121073530
AJZR01000047
Bacteroidota
Capnocytophaga sp. oral taxon 412 oral taxon 412 str. F0487 [AJZR]
36767
36843
+
Arg
TCT
[ENA]
¡û
>W121081352
AKFR01000033
Bacteroidota
Capnocytophaga sp. oral taxon 335 oral taxon 335 str. F0486 [AKFR]
14204
14280
+
Arg
TCT
[ENA]
¡û
>W121081535
AKFV01000029
Bacteroidota
Capnocytophaga ochracea str. Holt 25 [AKFV]
33715
33639
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
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(Sample source for ENV)
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Direction
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Decision
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Representative sequence of each cluster
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