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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28682 (4 seq.)
>WENV170677896
LDZT01009986
[LDZT] terrestrial metagenome; oil reservoir sample SB1
11446
11535
+
Ser
GGA
[ENA]
¡û
>WENV170678537
LDZU01001636
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1272
1361
+
Ser
GGA
[ENA]
¡û
>W1610614107
LGGT01000004
Unclassified
Microgenomates bacterium 39_6 [LGGT]
11446
11535
+
Ser
GGA
[ENA]
¡û
>W1710735190
LGGT01000004
Unclassified
Microgenomates bacterium 39_6 [LGGT]
11446
11535
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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