This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28687 (30 seq.)
>C171046530
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
10945517
10945606
+
Ser
CGA
-
¡û
>WENV180019810
FTCO01001586
[FTCO] metagenome; soil
1753
1841
+
Ser
CGA
[ENA]
¡û
>W141073138
ASRX01000066
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
73579
73492
-
Ser
CGA
[ENA]
¡û
>C08008932
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
10308514
10308425
-
Ser
CGA
[Ensembl]
¡û
>C181012501
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
11924687
11924600
-
Ser
CGA
-
¡û
>C191010029
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
8592028
8591941
-
Ser
CGA
-
¡û
>C191010082
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
11935973
11935886
-
Ser
CGA
-
¡û
>C151091958
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
1613808
1613897
+
Ser
CGA
-
¡û
>W2011690761
SSMQ01000002
Myxococcota
Polyangium fumosum DSM 14668 [SSMQ]
263667
263754
+
Ser
CGA
[ENA]
¡û
>W2011690847
SSMR01000003
Myxococcota
Polyangium sp. SDU3-1 [SSMR]
616455
616542
+
Ser
CGA
[ENA]
¡û
>W2012351013
WJIE01000005
Myxococcota
Polyangium spumosum DSM 14734 [WJIE]
603057
603144
+
Ser
CGA
[ENA]
¡û
>C231161630
CP079217
Myxococcota
Polyangium aurulentum SDU3-1 [CP079217]
4236735
4236648
-
Ser
CGA
-
¡û
>C231448185
CP102233
Myxococcota
Sorangium sp. Soce836 [CP102233]
11892371
11892284
-
Ser
CGA
-
¡û
>C131010768
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
12099457
12099368
-
Ser
CGA
[Ensembl]
¡û
>W1610520374
JELX01000757
Myxococcota
Sorangium cellulosum [JELX]
1959
1870
-
Ser
CGA
[ENA]
¡û
>W1610520429
JELY01001556
Myxococcota
Sorangium cellulosum [JELY]
3570
3481
-
Ser
CGA
[ENA]
¡û
>W1610520470
JELZ01000528
Myxococcota
Sorangium cellulosum [JELZ]
3419
3330
-
Ser
CGA
[ENA]
¡û
>W1610520528
JEMA01000683
Myxococcota
Sorangium cellulosum [JEMA]
5551
5640
+
Ser
CGA
[ENA]
¡û
>W1610520606
JEMB01003275
Myxococcota
Sorangium cellulosum [JEMB]
195
284
+
Ser
CGA
[ENA]
¡û
>W1610520659
JEMC01004023
Myxococcota
Sorangium cellulosum [JEMC]
74
163
+
Ser
CGA
[ENA]
¡û
>W1610520689
JEMD01001714
Myxococcota
Sorangium cellulosum [JEMD]
1963
2052
+
Ser
CGA
[ENA]
¡û
>W1610520713
JEME01000489
Myxococcota
Sorangium cellulosum [JEME]
3577
3488
-
Ser
CGA
[ENA]
¡û
>W1710615852
JELX01000757
Myxococcota
Sorangium cellulosum [JELX]
1959
1870
-
Ser
CGA
[ENA]
¡û
>W1710615907
JELY01001556
Myxococcota
Sorangium cellulosum [JELY]
3570
3481
-
Ser
CGA
[ENA]
¡û
>W1710615948
JELZ01000528
Myxococcota
Sorangium cellulosum [JELZ]
3419
3330
-
Ser
CGA
[ENA]
¡û
>W1710616006
JEMA01000683
Myxococcota
Sorangium cellulosum [JEMA]
5551
5640
+
Ser
CGA
[ENA]
¡û
>W1710616084
JEMB01003275
Myxococcota
Sorangium cellulosum [JEMB]
195
284
+
Ser
CGA
[ENA]
¡û
>W1710616137
JEMC01004023
Myxococcota
Sorangium cellulosum [JEMC]
74
163
+
Ser
CGA
[ENA]
¡û
>W1710616167
JEMD01001714
Myxococcota
Sorangium cellulosum [JEMD]
1963
2052
+
Ser
CGA
[ENA]
¡û
>W1710616191
JEME01000489
Myxococcota
Sorangium cellulosum [JEME]
3577
3488
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK