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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28689 (30 seq.)
>C171046534
CP016211
Myxococcota
Minicystis rosea DSM 24000 [CP016211]
11196132
11196221
+
Ser
GCT
-
¡û
>WENV180015906
FSTQ01000339
[FSTQ] metagenome; soil
4910
4823
-
Ser
GCT
[ENA]
¡û
>WENV180029247
FTJI01260264
[FTJI] metagenome; soil
233
146
-
Ser
GCT
[ENA]
¡û
>WENV180034765
FTKR01252944
[FTKR] metagenome; soil
233
146
-
Ser
GCT
[ENA]
¡û
>W141073093
ASRX01000015
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
11578
11667
+
Ser
GCT
[ENA]
¡û
>C08008926
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
11536267
11536356
+
Ser
GCT
[Ensembl]
¡û
>C181012499
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
13153433
13153345
-
Ser
GCT
-
¡û
>C191010023
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
10018977
10019065
+
Ser
GCT
-
¡û
>C191010076
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
13321043
13321130
+
Ser
GCT
-
¡û
>C151091952
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
779425
779514
+
Ser
GCT
-
¡û
>C231448179
CP102233
Myxococcota
Sorangium sp. Soce836 [CP102233]
13277473
13277560
+
Ser
GCT
-
¡û
>C131010760
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
13565112
13565201
+
Ser
GCT
[Ensembl]
¡û
>W1610520380
JELX01001608
Myxococcota
Sorangium cellulosum [JELX]
752
841
+
Ser
GCT
[ENA]
¡û
>W1610520448
JELY01002470
Myxococcota
Sorangium cellulosum [JELY]
933
1022
+
Ser
GCT
[ENA]
¡û
>W1610520486
JELZ01001661
Myxococcota
Sorangium cellulosum [JELZ]
1136
1225
+
Ser
GCT
[ENA]
¡û
>W1610520537
JEMA01000751
Myxococcota
Sorangium cellulosum [JEMA]
4234
4145
-
Ser
GCT
[ENA]
¡û
>W1610520579
JEMB01001929
Myxococcota
Sorangium cellulosum [JEMB]
271
182
-
Ser
GCT
[ENA]
¡û
>W1610520639
JEMC01002682
Myxococcota
Sorangium cellulosum [JEMC]
1071
1160
+
Ser
GCT
[ENA]
¡û
>W1610520708
JEMD01002489
Myxococcota
Sorangium cellulosum [JEMD]
6035
6124
+
Ser
GCT
[ENA]
¡û
>W1610520719
JEME01000800
Myxococcota
Sorangium cellulosum [JEME]
1029
1118
+
Ser
GCT
[ENA]
¡û
>W1630002267
BBEO01002026
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
990
1076
+
Ser
GCT
[ENA]
¡û
>W1730001488
BBEO01002026
Myxococcota
Byssovorax cruenta JCM 12614 [BBEO]
990
1076
+
Ser
GCT
[ENA]
¡û
>W1710615858
JELX01001608
Myxococcota
Sorangium cellulosum [JELX]
752
841
+
Ser
GCT
[ENA]
¡û
>W1710615926
JELY01002470
Myxococcota
Sorangium cellulosum [JELY]
933
1022
+
Ser
GCT
[ENA]
¡û
>W1710615964
JELZ01001661
Myxococcota
Sorangium cellulosum [JELZ]
1136
1225
+
Ser
GCT
[ENA]
¡û
>W1710616015
JEMA01000751
Myxococcota
Sorangium cellulosum [JEMA]
4234
4145
-
Ser
GCT
[ENA]
¡û
>W1710616057
JEMB01001929
Myxococcota
Sorangium cellulosum [JEMB]
271
182
-
Ser
GCT
[ENA]
¡û
>W1710616117
JEMC01002682
Myxococcota
Sorangium cellulosum [JEMC]
1071
1160
+
Ser
GCT
[ENA]
¡û
>W1710616186
JEMD01002489
Myxococcota
Sorangium cellulosum [JEMD]
6035
6124
+
Ser
GCT
[ENA]
¡û
>W1710616197
JEME01000800
Myxococcota
Sorangium cellulosum [JEME]
1029
1118
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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