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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.286960 (39 seq.)
>W1711464296
MJJZ01000003
Campylobacterota
Campylobacter sp. P0021 [MJJZ]
67717
67642
-
Phe
GAA
[ENA]
¡û
>W1711464353
MJKB01000001
Campylobacterota
Campylobacter sp. P0085 [MJKB]
89014
89089
+
Phe
GAA
[ENA]
¡û
>W1711464460
MJKD01000006
Campylobacterota
Campylobacter sp. P0088 [MJKD]
83827
83902
+
Phe
GAA
[ENA]
¡û
>W1711464498
MJKE01000005
Campylobacterota
Campylobacter sp. P0094 [MJKE]
83737
83812
+
Phe
GAA
[ENA]
¡û
>W1711464809
MJKN01000001
Campylobacterota
Campylobacter sp. P0134 [MJKN]
82534
82609
+
Phe
GAA
[ENA]
¡û
>W1711464912
MJKP01000005
Campylobacterota
Campylobacter sp. P0136 [MJKP]
116281
116356
+
Phe
GAA
[ENA]
¡û
>W1711464976
MJKR01000003
Campylobacterota
Campylobacter sp. P0139 [MJKR]
83676
83751
+
Phe
GAA
[ENA]
¡û
>W1711465068
MJKT01000005
Campylobacterota
Campylobacter sp. P0187 [MJKT]
88588
88663
+
Phe
GAA
[ENA]
¡û
>W1711465181
MJKW01000005
Campylobacterota
Campylobacter sp. P0227 [MJKW]
74024
73949
-
Phe
GAA
[ENA]
¡û
>W1711465231
MJKY01000002
Campylobacterota
Campylobacter sp. P090 [MJKY]
73037
72962
-
Phe
GAA
[ENA]
¡û
>W1711465296
MJKZ01000005
Campylobacterota
Campylobacter sp. P091 [MJKZ]
108556
108481
-
Phe
GAA
[ENA]
¡û
>W1711465435
MJLD01000004
Campylobacterota
Campylobacter sp. P155 [MJLD]
84295
84370
+
Phe
GAA
[ENA]
¡û
>W1711465520
MJLF01000004
Campylobacterota
Campylobacter sp. P159 [MJLF]
72721
72646
-
Phe
GAA
[ENA]
¡û
>W1711465563
MJLG01000006
Campylobacterota
Campylobacter sp. P160 [MJLG]
69529
69454
-
Phe
GAA
[ENA]
¡û
>W1711465590
MJLH01000004
Campylobacterota
Campylobacter sp. P162 [MJLH]
69293
69218
-
Phe
GAA
[ENA]
¡û
>W1711465682
MJLJ01000009
Campylobacterota
Campylobacter sp. P0078 [MJLJ]
59768
59693
-
Phe
GAA
[ENA]
¡û
>WENV180118456
OASD01000003
[OASD] human gut metagenome; ENVO:feces
255766
255841
+
Phe
GAA
[ENA]
¢þ
>WENV180403324
OBRT01000001
[OBRT] human gut metagenome; ENVO:feces
223270
223345
+
Phe
GAA
[ENA]
¢þ
>WENV180405247
OBTM01000106
[OBTM] human gut metagenome; ENVO:feces
15579
15654
+
Phe
GAA
[ENA]
¢þ
>WENV180597073
OCPK01001302
[OCPK] human gut metagenome; ENVO:feces
96
171
+
Phe
GAA
[ENA]
¢þ
>WENV180597706
OCPL01022217
[OCPL] human gut metagenome; ENVO:feces
519
444
-
Phe
GAA
[ENA]
¢þ
>WENV180786390
ODIR01217145
[ODIR] human metagenome; G_DNA_Stool
27
102
+
Phe
GAA
[ENA]
¢þ
>WENV180983483
ODVF01015363
[ODVF] human metagenome; G_DNA_Supragingival plaque
667
592
-
Phe
GAA
[ENA]
¢þ
>C08003190
CP000776
Campylobacterota
Campylobacter hominis ATCC BAA-381 [CP000776]
1515487
1515415
-
Phe
GAA
[Ensembl]
¡û
>C181038890
CP019683
Campylobacterota
Campylobacter sputorum bv. faecalis CCUG 20703 [CP019683]
1149406
1149481
+
Phe
GAA
-
¡û
>C181038935
CP019684
Campylobacterota
Campylobacter sputorum bv. paraureolyticus LMG 11764 LMG 17589 [CP019684]
1134512
1134587
+
Phe
GAA
-
¡û
>C181038979
CP019685
Campylobacterota
Campylobacter sputorum RM8705 [CP019685]
1096233
1096308
+
Phe
GAA
-
¡û
>W1810148697
PIRV01000001
Campylobacterota
Campylobacter concisus H15O-S1 [PIRV]
601233
601158
-
Phe
GAA
[ENA]
¡û
>W1810230099
PPAA01000073
Campylobacterota
Campylobacter concisus AAUH-9HCasc [PPAA]
7091
7166
+
Phe
GAA
[ENA]
¡û
>W1810230217
PPAD01000041
Campylobacterota
Campylobacter concisus AAUH-12CDo [PPAD]
46045
46120
+
Phe
GAA
[ENA]
¡û
>W1810230504
PPAK01000040
Campylobacterota
Campylobacter concisus AAUH-12CDdes2 [PPAK]
7460
7535
+
Phe
GAA
[ENA]
¡û
>W1810230708
PPAP01000048
Campylobacterota
Campylobacter concisus AAUH-16UCo-a [PPAP]
39891
39966
+
Phe
GAA
[ENA]
¡û
>W1810230746
PPAQ01000025
Campylobacterota
Campylobacter concisus AAUH-12CDsig [PPAQ]
265785
265860
+
Phe
GAA
[ENA]
¡û
>W1810230798
PPAR01000063
Campylobacterota
Campylobacter concisus AAUH-16UCf [PPAR]
184743
184818
+
Phe
GAA
[ENA]
¡û
>W1810232282
PPCD01000006
Campylobacterota
Campylobacter concisus AAUH-12CDdes3 [PPCD]
28709
28784
+
Phe
GAA
[ENA]
¡û
>W1810232346
PPCE01000009
Campylobacterota
Campylobacter concisus AAUH-12CDti2-a [PPCE]
229721
229796
+
Phe
GAA
[ENA]
¡û
>W1810232365
PPCF01000029
Campylobacterota
Campylobacter concisus AAUH-16UCf2 [PPCF]
50908
50983
+
Phe
GAA
[ENA]
¡û
>C151095533
CP012541
Campylobacterota
Campylobacter concisus ATCC 33237 [CP012541]
446431
446506
+
Phe
GAA
-
¡û
>W1511205853
JMTI01000004
Campylobacterota
Campylobacter sputorum biovar sputorum INTA08/209 [JMTI]
33030
33105
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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