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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28699 (57 seq.)
>W1710877380
LMQB01000001
Alphaproteobacteria
Rhizobium sp. Leaf371 [LMQB]
1036273
1036184
-
Ser
TGA
[ENA]
¡û
>W1711338036
MBSS01000045
Alphaproteobacteria
Ensifer sp. LC163 [MBSS]
9242
9331
+
Ser
TGA
[ENA]
¡û
>W1711338065
MBST01000015
Alphaproteobacteria
Ensifer sp. LC384 [MBST]
120441
120352
-
Ser
TGA
[ENA]
¡û
>W131163311
AQZQ01000005
Alphaproteobacteria
Ensifer sp. BR816 BR816 [AQZQ]
1543467
1543556
+
Ser
TGA
[ENA]
¡û
>W141041973
AMCX01000004
Alphaproteobacteria
Sinorhizobium fredii GR64 [AMCX]
38923
38834
-
Ser
TGA
[ENA]
¡û
>W141180695
AYGY02000185
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
4588
4499
-
Ser
TGA
[ENA]
¡û
>W141276994
JAEG01000001
Alphaproteobacteria
Ciceribacter selenitireducens ATCC BAA-1503 [JAEG]
246326
246237
-
Ser
TGA
[ENA]
¡û
>WENV170668391
LADL02003461
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
5545
5456
-
Ser
TGA
[ENA]
¡û
>C181075725
CP023063
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 [CP023063]
1672936
1673025
+
Ser
TGA
-
¡û
>C181099201
CP024307
Alphaproteobacteria
Sinorhizobium fredii NXT3 [CP024307]
2031954
2032043
+
Ser
TGA
-
¡û
>C181176248
CP029231
Alphaproteobacteria
Sinorhizobium fredii CCBAU 45436 [CP029231]
1609193
1609282
+
Ser
TGA
-
¡û
>C181178629
CP029451
Alphaproteobacteria
Sinorhizobium fredii CCBAU 25509 [CP029451]
1868039
1868128
+
Ser
TGA
-
¡û
>W1910182981
BJNI01000008
Alphaproteobacteria
Sinorhizobium fredii NBRC 14780 [BJNI]
142672
142583
-
Ser
TGA
[ENA]
¡û
>W1910636517
LODU01000025
Alphaproteobacteria
Sinorhizobium americanum FG01 [LODU]
203588
203677
+
Ser
TGA
[ENA]
¡û
>W1910658184
MBFK01000008
Alphaproteobacteria
Ensifer sp. CCBAU 251167 [MBFK]
8126
8215
+
Ser
TGA
[ENA]
¡û
>C09108770
CP001389
Alphaproteobacteria
Sinorhizobium fredii NGR234 [CP001389]
1661973
1662062
+
Ser
TGA
[Ensembl]
¡û
>W1810195943
PKSP01000010
Alphaproteobacteria
Rhizobium sp. KAs_5_22 [PKSP]
1990662
1990573
-
Ser
TGA
[ENA]
¡û
>W1810665658
QJNR01000004
Alphaproteobacteria
Ensifer sp. M14 [QJNR]
2951810
2951899
+
Ser
TGA
[ENA]
¡û
>W2010096596
BJNI01000008
Alphaproteobacteria
Sinorhizobium fredii NBRC 14780 [BJNI]
142672
142583
-
Ser
TGA
[ENA]
¡û
>W2010105505
BJZP01000001
Alphaproteobacteria
Rhizobium naphthalenivorans NBRC 107585 [BJZP]
310602
310691
+
Ser
TGA
[ENA]
¡û
>W2010636391
JABUOU010000001
Alphaproteobacteria
Martelella limonii NBRC 109441 [JABUOU]
610623
610535
-
Ser
TGA
[ENA]
¡û
>W2010725401
JACIEC010000001
Alphaproteobacteria
Rhizobium rhizoryzae DSM 29514 [JACIEC]
704059
703970
-
Ser
TGA
[ENA]
¡û
>W2010783795
LODU01000025
Alphaproteobacteria
Sinorhizobium americanum FG01 [LODU]
203588
203677
+
Ser
TGA
[ENA]
¡û
>W2010804815
MBFK01000008
Alphaproteobacteria
Ensifer sp. CCBAU 251167 [MBFK]
8126
8215
+
Ser
TGA
[ENA]
¡û
>W2011136463
NWTB01000003
Alphaproteobacteria
Sinorhizobium sp. FG01 [NWTB]
203588
203677
+
Ser
TGA
[ENA]
¡û
>W2011685612
SRXN01000033
Alphaproteobacteria
Ensifer sp. MPMI2T [SRXN]
9779
9868
+
Ser
TGA
[ENA]
¡û
>W2011694300
STFZ01000002
Alphaproteobacteria
Rhizobium sp. FY34 [STFZ]
23878
23789
-
Ser
TGA
[ENA]
¡û
>W2011694352
STGA01000008
Alphaproteobacteria
Rhizobium sp. FKY42 [STGA]
172721
172632
-
Ser
TGA
[ENA]
¡û
>W2011811013
UEYP01000002
Alphaproteobacteria
Rhizobium selenitireducens ATCC BAA-1503 [UEYP]
472011
472100
+
Ser
TGA
[ENA]
¡û
>W2011811067
UEYQ01000005
Alphaproteobacteria
Rhizobium naphthalenivorans [UEYQ]
305709
305798
+
Ser
TGA
[ENA]
¡û
>W2011976153
VCLB01000007
Alphaproteobacteria
Martelella sp. GH2-6 [VCLB]
45531
45442
-
Ser
TGA
[ENA]
¡û
>W2012340849
WISZ01000068
Alphaproteobacteria
Sinorhizobium fredii USDA205 [WISZ]
9767
9856
+
Ser
TGA
[ENA]
¡û
>W2012340937
WITA01000213
Alphaproteobacteria
Sinorhizobium fredii USDA207 [WITA]
11888
11799
-
Ser
TGA
[ENA]
¡û
>W2012341039
WITC01000084
Alphaproteobacteria
Sinorhizobium terangae USDA4894 [WITC]
37107
37018
-
Ser
TGA
[ENA]
¡û
>W2110537925
JAGGJR010000012
Alphaproteobacteria
Ensifer adhaerens DSM 18131 [JAGGJR]
190490
190401
-
Ser
TGA
[ENA]
¡û
>C231042260
CP035040
Alphaproteobacteria
Sinorhizobium fredii SMH12 [CP035040]
1690180
1690269
+
Ser
TGA
-
¡û
>C241055957
CP041238
Alphaproteobacteria
Sinorhizobium mexicanum ITTG R7 [CP041238]
2038707
2038618
-
Ser
TGA
-
¡û
>C241135232
CP049250
Alphaproteobacteria
Rhizobium rhizoryzae DSM 29514 [CP049250]
2631174
2631085
-
Ser
TGA
-
¡û
>W2110803100
WVSP01000001
Alphaproteobacteria
Rhodobacterales bacterium LSUCC0031 [WVSP]
910316
910405
+
Ser
TGA
[ENA]
¡û
>C241245125
CP121659
Alphaproteobacteria
Sinorhizobium terangae CB3126 [CP121659]
1375131
1375042
-
Ser
TGA
-
¡û
>C241332000
CP137016
Alphaproteobacteria
Sinorhizobium fredii GR64 [CP137016]
1851273
1851362
+
Ser
TGA
-
¡û
>W2310025062
BSOI01000001
Alphaproteobacteria
Ciceribacter naphthalenivorans NBRC 107585 [BSOI]
36435
36346
-
Ser
TGA
[ENA]
¡û
>W2310026026
BSPA01000091
Alphaproteobacteria
Sinorhizobium fredii NBRC 14780 [BSPA]
142691
142602
-
Ser
TGA
[ENA]
¡û
>W2310026709
BSPT01000001
Alphaproteobacteria
Sphingomonas psychrolutea NBRC 109639 [BSPT]
36435
36346
-
Ser
TGA
[ENA]
¡û
>C121014588
CP003563
Alphaproteobacteria
Sinorhizobium fredii USDA 257 [CP003563]
4218629
4218718
+
Ser
TGA
[Ensembl]
¡û
>W1610024799
AUTC01000077
Alphaproteobacteria
Sinorhizobium fredii USDA 205 [AUTC]
142625
142536
-
Ser
TGA
[ENA]
¡û
>W121066028
AJQM01000276
Alphaproteobacteria
Sinorhizobium fredii CCBAU 05557 [AJQM]
4510
4599
+
Ser
TGA
[ENA]
¡û
>W121066063
AJQN01000166
Alphaproteobacteria
Sinorhizobium fredii CCBAU 25509 [AJQN]
4519
4608
+
Ser
TGA
[ENA]
¡û
>W121066092
AJQO01000065
Alphaproteobacteria
Sinorhizobium fredii CCBAU 45436 [AJQO]
43770
43681
-
Ser
TGA
[ENA]
¡û
>W121066162
AJQP01000102
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83622 [AJQP]
58045
58134
+
Ser
TGA
[ENA]
¡û
>W1610597376
LFES01000049
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha7 [LFES]
5290
5379
+
Ser
TGA
[ENA]
¡û
>W1610727126
LMGD01000012
Alphaproteobacteria
Rhizobium sp. Root149 [LMGD]
700808
700719
-
Ser
TGA
[ENA]
¡û
>W1610739726
LMQB01000001
Alphaproteobacteria
Rhizobium sp. Leaf371 [LMQB]
1036273
1036184
-
Ser
TGA
[ENA]
¡û
>W1611066889
MBSR01000038
Alphaproteobacteria
Ensifer sp. LC54 [MBSR]
9242
9331
+
Ser
TGA
[ENA]
¡û
>W1710021240
AUTC01000077
Alphaproteobacteria
Sinorhizobium fredii USDA 205 [AUTC]
142625
142536
-
Ser
TGA
[ENA]
¡û
>W1710606395
FWXU01000004
Alphaproteobacteria
Rhizobium sp. RU36D [FWXU]
239752
239841
+
Ser
TGA
[ENA]
¡û
>W1710718700
LFES01000049
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha7 [LFES]
5290
5379
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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