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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287034 (4 seq.)
>WENV181371301
OFQV01000269
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
4090
4165
+
Thr
TGT
[ENA]
¡û
>WENV181378351
OFRB01001166
[OFRB] wastewater metagenome; Exp Tend CN 0WW
2567
2492
-
Thr
TGT
[ENA]
¡û
>WENV181378793
OFRC01000262
[OFRC] wastewater metagenome; Exp Tend CN 10WW
5873
5798
-
Thr
TGT
[ENA]
¡û
>WENV181381557
OFRF01000272
[OFRF] wastewater metagenome; Exp Tend CN 50WW
3418
3493
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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