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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287296 (50 seq.)
>W1711091813
LTDM01000011
Bacillota
Tissierella creatinophila DSM 6911 [LTDM]
82487
82412
-
Lys
TTT
[ENA]
¡û
>W1711091828
LTDM01000014
Bacillota
Tissierella creatinophila DSM 6911 [LTDM]
40003
39928
-
Lys
TTT
[ENA]
¡û
>C171098304
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
1814565
1814640
+
Lys
TTT
-
¡û
>C171098326
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
2730518
2730443
-
Lys
TTT
-
¡û
>C171098336
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
95058
94983
-
Lys
TTT
-
¡û
>C171130869
LT700188
Bacillota
Negativicoccus massiliensis Marseille-P2082 [LT700188]
513550
513475
-
Lys
TTT
-
¡û
>W131221510
AUAN01000004
Bacillota
Veillonella magna DSM 19857 [AUAN]
68037
67962
-
Lys
TTT
[ENA]
¡û
>WENV180172602
OAVX01009652
[OAVX] human gut metagenome; faeces
57
132
+
Lys
TTT
[ENA]
¢þ
>WENV181236109
OFEY01033220
[OFEY] mouse gut metagenome; faeces
303
378
+
Lys
TTT
[ENA]
¢þ
>WENV181238180
OFFB01028456
[OFFB] mouse gut metagenome; faeces
471
546
+
Lys
TTT
[ENA]
¢þ
>WENV181252573
OFFP01049387
[OFFP] mouse gut metagenome; faeces
249
324
+
Lys
TTT
[ENA]
¢þ
>WENV181262943
OFFY01085774
[OFFY] mouse gut metagenome; faeces
146
71
-
Lys
TTT
[ENA]
¢þ
>WENV181265170
OFGA01036211
[OFGA] mouse gut metagenome; faeces
459
534
+
Lys
TTT
[ENA]
¢þ
>WENV181269884
OFGE01011111
[OFGE] mouse gut metagenome; faeces
3255
3180
-
Lys
TTT
[ENA]
¢þ
>WENV181301150
OFHN01040237
[OFHN] mouse gut metagenome; faeces
272
197
-
Lys
TTT
[ENA]
¢þ
>WENV181801700
OGSC01000009
[OGSC] human gut metagenome; fecal sample 8 from infant 5
210478
210553
+
Lys
TTT
[ENA]
¢þ
>WENV182188480
OHOM01019422
[OHOM] human gut metagenome; feces
380
455
+
Lys
TTT
[ENA]
¢þ
>WENV182804244
OJUT01000046
[OJUT] human gut metagenome; human gut
68003
68078
+
Lys
TTT
[ENA]
¢þ
>WENV182804271
OJUT01000074
[OJUT] human gut metagenome; human gut
50066
50141
+
Lys
TTT
[ENA]
¢þ
>WENV182805472
OJVE01000514
[OJVE] human gut metagenome; human gut
251
176
-
Lys
TTT
[ENA]
¢þ
>WENV182809737
OJWS01000183
[OJWS] human gut metagenome; human gut
3330
3255
-
Lys
TTT
[ENA]
¢þ
>WENV182828669
OKDJ01000034
[OKDJ] human gut metagenome; human gut
50062
49987
-
Lys
TTT
[ENA]
¢þ
>WENV182830634
OKDZ01000855
[OKDZ] human gut metagenome; human gut
2813
2888
+
Lys
TTT
[ENA]
¢þ
>WENV182848494
OKKH01001850
[OKKH] human gut metagenome; human gut
360
435
+
Lys
TTT
[ENA]
¢þ
>WENV182854820
OKMX01000021
[OKMX] human gut metagenome; human gut
67479
67554
+
Lys
TTT
[ENA]
¢þ
>WENV182857183
OKNU01001031
[OKNU] human gut metagenome; human gut
494
569
+
Lys
TTT
[ENA]
¢þ
>WENV182938402
OKVD01007025
[OKVD] human gut metagenome; human gut
343
268
-
Lys
TTT
[ENA]
¢þ
>WENV182952116
OKVV01003296
[OKVV] human gut metagenome; human gut
631
556
-
Lys
TTT
[ENA]
¢þ
>WENV182961248
OKWK01000560
[OKWK] human gut metagenome; stool
13578
13653
+
Lys
TTT
[ENA]
¢þ
>WENV182961333
OKWK01001401
[OKWK] human gut metagenome; stool
1851
1776
-
Lys
TTT
[ENA]
¢þ
>WENV183083539
OLJC01000643
[OLJC] human gut metagenome; human gut
2218
2143
-
Lys
TTT
[ENA]
¢þ
>WENV183083546
OLJC01000747
[OLJC] human gut metagenome; human gut
1803
1728
-
Lys
TTT
[ENA]
¢þ
>WENV183225347
OLQN01061093
[OLQN] human gut metagenome; faeces
112
37
-
Lys
TTT
[ENA]
¢þ
>WENV183713503
PDWI01141139
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1233
1158
-
Lys
TTT
[ENA]
¢þ
>WENV183720971
PDWJ01050979
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1972
2047
+
Lys
TTT
[ENA]
¢þ
>C181016532
CP014606
Bacillota
endosymbiont 'TC1' of Trimyema compressum [CP014606]
1413573
1413648
+
Lys
TTT
-
¡û
>W09105169
AAOP01000032
Bacillota
Desulforamulus reducens MI-1 [AAOP]
37861
37936
+
Lys
TTT
[ENA]
¡û
>W1910004944
AWVY01000010
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
41933
42008
+
Lys
TTT
[ENA]
¡û
>W1910004976
AWVY01000045
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
8284
8359
+
Lys
TTT
[ENA]
¡û
>W1910004993
AWVY01000061
Bacillota
Desulforamulus aquiferis Bs105 [AWVY]
50712
50637
-
Lys
TTT
[ENA]
¡û
>W1910341060
FTPC01000001
Bacillota
Peptoniphilus urinae Marseille-P3195 [FTPC]
186644
186569
-
Lys
TTT
[ENA]
¡û
>W1911541774
OPYI01000001
Bacillota
Peptoniphilus coli Marseille-P3761 [OPYI]
825
900
+
Lys
TTT
[ENA]
¡û
>W1810721327
QNRX01000001
Bacillota
Alkalibaculum bacchi DSM 22112 [QNRX]
30920
30845
-
Lys
TTT
[ENA]
¡û
>W1810721346
QNRX01000007
Bacillota
Alkalibaculum bacchi DSM 22112 [QNRX]
159581
159506
-
Lys
TTT
[ENA]
¡û
>W1511351157
JRMZ01000008
Bacillota
Tissierellia bacterium S5-A11 S5-A11 [JRMZ]
196
121
-
Lys
TTT
[ENA]
¡û
>W1511351173
JRMZ01000016
Bacillota
Tissierellia bacterium S5-A11 S5-A11 [JRMZ]
1721
1646
-
Lys
TTT
[ENA]
¡û
>W11150385
AEVP01000025
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
25679
25754
+
Lys
TTT
[ENA]
¡û
>W11150409
AEVP01000052
Bacillota
Desulfotomaculum nigrificans DSM 574 [AEVP]
280
205
-
Lys
TTT
[ENA]
¡û
>W1610506394
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
185077
185002
-
Lys
TTT
[ENA]
¡û
>W1710498897
FLQT01000003
Bacillota
Peptoniphilus pacaensis KHD5 [FLQT]
185077
185002
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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