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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287314 (37 seq.)
>C171127287
CP021987
Mycoplasmatota
Ureaplasma parvum hebnu3h04 [CP021987]
500552
500627
+
Trp
CCA
-
¡û
>C171127323
CP021988
Mycoplasmatota
Ureaplasma parvum hebnu3h05 [CP021988]
233215
233140
-
Trp
CCA
-
¡û
>C171127342
CP021989
Mycoplasmatota
Ureaplasma parvum hebnu3h07 [CP021989]
608528
608603
+
Trp
CCA
-
¡û
>C171127376
CP021990
Mycoplasmatota
Ureaplasma parvum hebnu1229 [CP021990]
280054
279979
-
Trp
CCA
-
¡û
>C171127414
CP021991
Mycoplasmatota
Ureaplasma parvum hebnu uu3 [CP021991]
24769
24694
-
Trp
CCA
-
¡û
>C026068
AF222894
Mycoplasmatota
Ureaplasma parvum [AF222894]
661037
660962
-
Trp
CCA
[Ensembl]
¡û
>w025432
AAZT01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 12 [AAZT]
395073
395148
+
Trp
CCA
[ENA]
¡û
>w025406
AAZS01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 11 [AAZS]
293051
292979
-
Trp
CCA
[ENA]
¡û
>w025398
AAZR01000005
Mycoplasmatota
Ureaplasma urealyticum serovar 5 [AAZR]
61241
61316
+
Trp
CCA
[ENA]
¡û
>w025351
AAZQ01000001
Mycoplasmatota
Ureaplasma parvum serovar 6 [AAZQ]
242160
242235
+
Trp
CCA
[ENA]
¡û
>w024357
AAYQ01000014
Mycoplasmatota
Ureaplasma urealyticum serovar 9 [AAYQ]
1102
1030
-
Trp
CCA
[ENA]
¡û
>w024306
AAYP01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 7 [AAYP]
266735
266663
-
Trp
CCA
[ENA]
¡û
>w024278
AAYO01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 4 [AAYO]
102792
102867
+
Trp
CCA
[ENA]
¡û
>w024251
AAYN01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 8 [AAYN]
60262
60190
-
Trp
CCA
[ENA]
¡û
>w024222
AAYM01000001
Mycoplasmatota
Ureaplasma parvum serovar 3 [AAYM]
207856
207784
-
Trp
CCA
[ENA]
¡û
>WENV180225652
OBBO01000003
[OBBO] human gut metagenome; Infant 2 DOL 5 gut
132767
132842
+
Trp
CCA
[ENA]
¢þ
>WENV180554148
OCJM01009613
[OCJM] human gut metagenome; Infant 2 DOL 6 gut
56
131
+
Trp
CCA
[ENA]
¢þ
>WENV180822740
ODJV01000062
[ODJV] human metagenome; G_DNA_Posterior fornix
3706
3781
+
Trp
CCA
[ENA]
¢þ
>W08002221
ABER01000001
Mycoplasmatota
Ureaplasma parvum serovar 14 str. ATCC 33697 [ABER]
235008
234936
-
Trp
CCA
[ENA]
¡û
>W08002256
ABES01000001
Mycoplasmatota
Ureaplasma parvum serovar 1 str. ATCC 27813 [ABES]
233766
233694
-
Trp
CCA
[ENA]
¡û
>W08002274
ABET01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 10 [ABET]
574831
574906
+
Trp
CCA
[ENA]
¡û
>W08002301
ABEV01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 13 str. ATCC 33698 [ABEV]
471498
471573
+
Trp
CCA
[ENA]
¡û
>W08002805
ABFL01000001
Mycoplasmatota
Ureaplasma urealyticum serovar 2 [ABFL]
563532
563607
+
Trp
CCA
[ENA]
¡û
>C08011093
CP000942
Mycoplasmatota
Ureaplasma parvum serovar 3 str. ATCC 27815 [CP000942]
661023
660951
-
Trp
CCA
[Ensembl]
¡û
>C191003513
AP018561
Mycoplasmatota
Ureaplasma parvum serovar 3 OMC-P162 [AP018561]
483978
483903
-
Trp
CCA
-
¡û
>C09110778
CP001184
Mycoplasmatota
Ureaplasma urealyticum serovar 10 str. ATCC 33699 [CP001184]
744242
744167
-
Trp
CCA
[Ensembl]
¡û
>W1911824653
QZWO01000021
Mycoplasmatota
Ureaplasma urealyticum 445 [QZWO]
232
157
-
Trp
CCA
[ENA]
¡û
>W1810735666
QOKT01000027
Mycoplasmatota
Ureaplasma urealyticum 1000 [QOKT]
80697
80622
-
Trp
CCA
[ENA]
¡û
>W1810735705
QOKU01000125
Mycoplasmatota
Ureaplasma urealyticum 1051 [QOKU]
2317
2242
-
Trp
CCA
[ENA]
¡û
>W1810757255
QPHI01000090
Mycoplasmatota
Ureaplasma parvum 445a [QPHI]
2289
2214
-
Trp
CCA
[ENA]
¡û
>W1810757282
QPHJ01000100
Mycoplasmatota
Ureaplasma urealyticum 1000a [QPHJ]
2289
2214
-
Trp
CCA
[ENA]
¡û
>W1810757306
QPHK01000140
Mycoplasmatota
Ureaplasma parvum 1051a [QPHK]
2289
2214
-
Trp
CCA
[ENA]
¡û
>C151002376
AP014584
Mycoplasmatota
Ureaplasma parvum serovar 3 SV3F4 [AP014584]
264856
264931
+
Trp
CCA
[Ensembl]
¡û
>W121060649
AJFX01000009
Mycoplasmatota
Ureaplasma urealyticum 2033 [AJFX]
117456
117381
-
Trp
CCA
[ENA]
¡û
>W121060680
AJFY01000009
Mycoplasmatota
Ureaplasma urealyticum 2608 [AJFY]
143496
143421
-
Trp
CCA
[ENA]
¡û
>W121060704
AJFZ01000005
Mycoplasmatota
Ureaplasma urealyticum 4155 [AJFZ]
136827
136752
-
Trp
CCA
[ENA]
¡û
>W121060731
AJGA01000011
Mycoplasmatota
Ureaplasma urealyticum 4318 [AJGA]
139703
139628
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK