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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287318 (5 seq.)
>WENV180372680
OBOI01109399
[OBOI] sediment metagenome; sediment
146
70
-
Pro
TGG
[ENA]
¡û
>WENV183748647
PPFU01064299
[PPFU] hypolithon metagenome; Antarctic Hypolithon
129
53
-
Pro
TGG
[ENA]
¡û
>WENV183749146
PPFU01126487
[PPFU] hypolithon metagenome; Antarctic Hypolithon
676
600
-
Pro
TGG
[ENA]
¡û
>W141564443
JIAT01000014
Actinomycetota
Solirubrobacterales bacterium URHD0059 [JIAT]
2671
2597
-
Pro
TGG
[ENA]
¡û
>W1810233342
PPDK01000001
Actinomycetota
Euzebya tangerina F10 [PPDK]
2412066
2412142
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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