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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287452 (102 seq.)
>W1710864355
LMFU01000002
Actinomycetota
Agromyces sp. Root1464 [LMFU]
1098238
1098163
-
Thr
CGT
[ENA]
¡û
>WENV180010624
FLSD01028152
[FLSD] metagenome; saliva
72
-1
-
Thr
CGT
[ENA]
¢þ
>WENV180698213
ODDE01094757
[ODDE] human metagenome; G_DNA_Supragingival plaque
129
203
+
Thr
CGT
[ENA]
¢þ
>WENV180698690
ODDH01078950
[ODDH] human metagenome; G_DNA_Buccal mucosa
72
-1
-
Thr
CGT
[ENA]
¢þ
>WENV180721574
ODGL01002339
[ODGL] human metagenome; G_DNA_Subgingival plaque
1231
1156
-
Thr
CGT
[ENA]
¢þ
>WENV180725818
ODGS01003268
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
2808
2883
+
Thr
CGT
[ENA]
¢þ
>WENV180726805
ODGU01000591
[ODGU] human metagenome; G_DNA_Supragingival plaque
2884
2809
-
Thr
CGT
[ENA]
¢þ
>WENV180732230
ODGY01000005
[ODGY] human metagenome; G_DNA_Supragingival plaque
4134
4059
-
Thr
CGT
[ENA]
¢þ
>WENV180735903
ODHB01001636
[ODHB] human metagenome; G_DNA_Supragingival plaque
6119
6193
+
Thr
CGT
[ENA]
¢þ
>WENV180738426
ODHD01000025
[ODHD] human metagenome; G_DNA_Supragingival plaque
149569
149496
-
Thr
CGT
[ENA]
¢þ
>WENV180750030
ODHS01000274
[ODHS] human metagenome; G_DNA_Supragingival plaque
627
552
-
Thr
CGT
[ENA]
¢þ
>WENV180755004
ODHU01007113
[ODHU] human metagenome; G_DNA_Supragingival plaque
634
560
-
Thr
CGT
[ENA]
¢þ
>WENV180764518
ODIB01000021
[ODIB] human metagenome; G_DNA_Supragingival plaque
60257
60332
+
Thr
CGT
[ENA]
¢þ
>WENV180777995
ODIM01000235
[ODIM] human metagenome; G_DNA_Supragingival plaque
633
558
-
Thr
CGT
[ENA]
¢þ
>WENV180781471
ODIP01000177
[ODIP] human metagenome; G_DNA_Supragingival plaque
21614
21688
+
Thr
CGT
[ENA]
¢þ
>WENV180788357
ODIS01052762
[ODIS] human metagenome; G_DNA_Supragingival plaque
959
1034
+
Thr
CGT
[ENA]
¢þ
>WENV180795242
ODIZ01063103
[ODIZ] human metagenome; G_DNA_Tongue dorsum
312
386
+
Thr
CGT
[ENA]
¢þ
>WENV180796522
ODJB01006181
[ODJB] human metagenome; G_DNA_Supragingival plaque
86
12
-
Thr
CGT
[ENA]
¢þ
>WENV180800400
ODJD01000004
[ODJD] human metagenome; G_DNA_Supragingival plaque
224081
224006
-
Thr
CGT
[ENA]
¢þ
>WENV180803510
ODJE01210388
[ODJE] human metagenome; G_DNA_Tongue dorsum
85
10
-
Thr
CGT
[ENA]
¢þ
>WENV180803620
ODJG01000005
[ODJG] human metagenome; G_DNA_Supragingival plaque
244865
244790
-
Thr
CGT
[ENA]
¢þ
>WENV180808972
ODJK01002446
[ODJK] human metagenome; G_DNA_Subgingival plaque
1825
1750
-
Thr
CGT
[ENA]
¢þ
>WENV180812900
ODJO01000002
[ODJO] human metagenome; G_DNA_Supragingival plaque
287359
287434
+
Thr
CGT
[ENA]
¢þ
>WENV180822120
ODJT01000021
[ODJT] human metagenome; G_DNA_Supragingival plaque
123697
123622
-
Thr
CGT
[ENA]
¢þ
>WENV180823399
ODJW01025745
[ODJW] human metagenome; G_DNA_Supragingival plaque
75
1
-
Thr
CGT
[ENA]
¢þ
>WENV180824076
ODJX01000578
[ODJX] human metagenome; G_DNA_Supragingival plaque
11470
11545
+
Thr
CGT
[ENA]
¢þ
>WENV180831687
ODKC01000036
[ODKC] human metagenome; G_DNA_Supragingival plaque
74468
74543
+
Thr
CGT
[ENA]
¢þ
>WENV180831941
ODKC01000267
[ODKC] human metagenome; G_DNA_Supragingival plaque
44276
44201
-
Thr
CGT
[ENA]
¢þ
>WENV180834247
ODKD01007612
[ODKD] human metagenome; G_DNA_Supragingival plaque
618
544
-
Thr
CGT
[ENA]
¢þ
>WENV180836031
ODKE01030926
[ODKE] human metagenome; G_DNA_Supragingival plaque
917
992
+
Thr
CGT
[ENA]
¢þ
>WENV180843039
ODKN01000326
[ODKN] human metagenome; G_DNA_Supragingival plaque
31034
31108
+
Thr
CGT
[ENA]
¢þ
>WENV180846999
ODKT01033993
[ODKT] human metagenome; G_DNA_Supragingival plaque
1453
1527
+
Thr
CGT
[ENA]
¢þ
>WENV180859127
ODLD01000026
[ODLD] human metagenome; G_DNA_Supragingival plaque
41455
41530
+
Thr
CGT
[ENA]
¢þ
>WENV180881339
ODMA01000024
[ODMA] human metagenome; G_DNA_Supragingival plaque
20353
20428
+
Thr
CGT
[ENA]
¢þ
>WENV180887964
ODMN01000006
[ODMN] human metagenome; G_DNA_Supragingival plaque
172635
172709
+
Thr
CGT
[ENA]
¢þ
>WENV180891652
ODMQ01003827
[ODMQ] human metagenome; G_DNA_Supragingival plaque
2192
2117
-
Thr
CGT
[ENA]
¢þ
>WENV180921363
ODTJ01000030
[ODTJ] human metagenome; G_DNA_Supragingival plaque
115456
115382
-
Thr
CGT
[ENA]
¢þ
>WENV180923457
ODTK01000001
[ODTK] human metagenome; G_DNA_Supragingival plaque
523042
522967
-
Thr
CGT
[ENA]
¢þ
>WENV180927211
ODTM01000064
[ODTM] human metagenome; G_DNA_Supragingival plaque
24360
24435
+
Thr
CGT
[ENA]
¢þ
>WENV180933716
ODTR01001505
[ODTR] human metagenome; G_DNA_Supragingival plaque
86
11
-
Thr
CGT
[ENA]
¢þ
>WENV180934465
ODTS01000118
[ODTS] human metagenome; G_DNA_Subgingival plaque
627
552
-
Thr
CGT
[ENA]
¢þ
>WENV180938140
ODTX01000732
[ODTX] human metagenome; G_DNA_Supragingival plaque
75
1
-
Thr
CGT
[ENA]
¢þ
>WENV180945258
ODUC01096918
[ODUC] human metagenome; G_DNA_Supragingival plaque
505
580
+
Thr
CGT
[ENA]
¢þ
>WENV180952274
ODUH01201399
[ODUH] human metagenome; G_DNA_Subgingival plaque
181
255
+
Thr
CGT
[ENA]
¢þ
>WENV180958031
ODUL01000189
[ODUL] human metagenome; G_DNA_Supragingival plaque
1479
1404
-
Thr
CGT
[ENA]
¢þ
>WENV180963870
ODUO01000013
[ODUO] human metagenome; G_DNA_Supragingival plaque
80953
81027
+
Thr
CGT
[ENA]
¢þ
>WENV180973480
ODUW01006645
[ODUW] human metagenome; G_DNA_Supragingival plaque
1288
1363
+
Thr
CGT
[ENA]
¢þ
>WENV180976121
ODUY01047741
[ODUY] human metagenome; G_DNA_Supragingival plaque
118
44
-
Thr
CGT
[ENA]
¢þ
>WENV180980241
ODVE01000004
[ODVE] human metagenome; G_DNA_Supragingival plaque
175326
175401
+
Thr
CGT
[ENA]
¢þ
>WENV180982704
ODVF01000350
[ODVF] human metagenome; G_DNA_Supragingival plaque
18048
18123
+
Thr
CGT
[ENA]
¢þ
>WENV180987249
ODVK01009822
[ODVK] human metagenome; G_DNA_Supragingival plaque
427
501
+
Thr
CGT
[ENA]
¢þ
>WENV180998052
ODVT01000005
[ODVT] human metagenome; G_DNA_Buccal mucosa
172634
172708
+
Thr
CGT
[ENA]
¢þ
>WENV181002089
ODVX01000016
[ODVX] human metagenome; G_DNA_Supragingival plaque
47702
47776
+
Thr
CGT
[ENA]
¢þ
>WENV181007380
ODWE01000056
[ODWE] human metagenome; G_DNA_Supragingival plaque
78835
78761
-
Thr
CGT
[ENA]
¢þ
>WENV181012464
ODWK01000425
[ODWK] human metagenome; G_DNA_Supragingival plaque
11496
11571
+
Thr
CGT
[ENA]
¢þ
>WENV181017601
ODWR01179491
[ODWR] human metagenome; G_DNA_Tongue dorsum
99
24
-
Thr
CGT
[ENA]
¢þ
>WENV181018720
ODWU01000042
[ODWU] human metagenome; G_DNA_Supragingival plaque
1547
1472
-
Thr
CGT
[ENA]
¢þ
>WENV181029165
ODXF01000003
[ODXF] human metagenome; G_DNA_Supragingival plaque
145985
146060
+
Thr
CGT
[ENA]
¢þ
>WENV181049350
ODYD01000053
[ODYD] human metagenome; G_DNA_Supragingival plaque
46062
45988
-
Thr
CGT
[ENA]
¢þ
>WENV181063041
ODYP01000033
[ODYP] human metagenome; G_DNA_Supragingival plaque
82506
82432
-
Thr
CGT
[ENA]
¢þ
>WENV181066593
ODZI01000317
[ODZI] human metagenome; G_DNA_Supragingival plaque
23361
23436
+
Thr
CGT
[ENA]
¢þ
>WENV181075551
OEAP01000027
[OEAP] human metagenome; G_DNA_Supragingival plaque
74719
74793
+
Thr
CGT
[ENA]
¢þ
>WENV181079303
OEAS01004381
[OEAS] human metagenome; G_DNA_Supragingival plaque
2893
2968
+
Thr
CGT
[ENA]
¢þ
>WENV181083955
OEAV01038243
[OEAV] human metagenome; G_DNA_Supragingival plaque
917
992
+
Thr
CGT
[ENA]
¢þ
>WENV181090155
OEBC01000006
[OEBC] human metagenome; G_DNA_Supragingival plaque
169950
169876
-
Thr
CGT
[ENA]
¢þ
>WENV181106597
OEEI01000005
[OEEI] human metagenome; G_DNA_Supragingival plaque
54348
54423
+
Thr
CGT
[ENA]
¢þ
>WENV181120116
OEFJ01005236
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
573
498
-
Thr
CGT
[ENA]
¢þ
>WENV181121900
OEFL01029028
[OEFL] human metagenome; G_DNA_Supragingival plaque
77
2
-
Thr
CGT
[ENA]
¢þ
>WENV181135454
OEGG01019634
[OEGG] human metagenome; G_DNA_Tongue dorsum
694
620
-
Thr
CGT
[ENA]
¢þ
>WENV181137049
OEGJ01000081
[OEGJ] human metagenome; G_DNA_Supragingival plaque
11489
11563
+
Thr
CGT
[ENA]
¢þ
>WENV181142920
OEHM01000008
[OEHM] human metagenome; G_DNA_Supragingival plaque
119735
119660
-
Thr
CGT
[ENA]
¢þ
>WENV181145669
OEHQ01000002
[OEHQ] human metagenome; G_DNA_Supragingival plaque
380187
380113
-
Thr
CGT
[ENA]
¢þ
>WENV181151960
OEIA01000002
[OEIA] human metagenome; G_DNA_Supragingival plaque
214547
214472
-
Thr
CGT
[ENA]
¢þ
>WENV181156255
OEIE01007020
[OEIE] human metagenome; G_DNA_Supragingival plaque
46
121
+
Thr
CGT
[ENA]
¢þ
>WENV181158886
OEIH01014754
[OEIH] human metagenome; G_DNA_Supragingival plaque
76
1
-
Thr
CGT
[ENA]
¢þ
>WENV181160054
OEIK01001606
[OEIK] human metagenome; G_DNA_Supragingival plaque
190
116
-
Thr
CGT
[ENA]
¢þ
>WENV181177089
OEJS01000004
[OEJS] human metagenome; G_DNA_Supragingival plaque
80953
81027
+
Thr
CGT
[ENA]
¢þ
>WENV181178835
OEJT01000340
[OEJT] human metagenome; G_DNA_Supragingival plaque
15180
15254
+
Thr
CGT
[ENA]
¢þ
>WENV181181560
OEJV01000002
[OEJV] human metagenome; G_DNA_Supragingival plaque
170024
169949
-
Thr
CGT
[ENA]
¢þ
>WENV183508061
OMHB01000039
[OMHB] human oral metagenome; human oral
11034
11108
+
Thr
CGT
[ENA]
¢þ
>WENV183508716
OMHF01000600
[OMHF] human oral metagenome; human oral
1289
1363
+
Thr
CGT
[ENA]
¢þ
>WENV183509187
OMHH01000031
[OMHH] human oral metagenome; human oral
6417
6490
+
Thr
CGT
[ENA]
¢þ
>WENV183509428
OMHI01002210
[OMHI] human oral metagenome; human oral
104
29
-
Thr
CGT
[ENA]
¢þ
>WENV183509647
OMHJ01002568
[OMHJ] human oral metagenome; human oral
104
30
-
Thr
CGT
[ENA]
¢þ
>WENV183509861
OMHK01000722
[OMHK] human oral metagenome; human oral
592
517
-
Thr
CGT
[ENA]
¢þ
>WENV183510329
OMHN01006248
[OMHN] human oral metagenome; human oral
99
174
+
Thr
CGT
[ENA]
¢þ
>WENV183510579
OMHP01000932
[OMHP] human oral metagenome; human oral
619
544
-
Thr
CGT
[ENA]
¢þ
>WENV183510783
OMHR01000121
[OMHR] human oral metagenome; human oral
563
489
-
Thr
CGT
[ENA]
¢þ
>WENV183510867
OMHS01006503
[OMHS] human oral metagenome; human oral
49
123
+
Thr
CGT
[ENA]
¢þ
>W09119733
ACEB01000003
Actinomycetota
Corynebacterium matruchotii ATCC 33806 [ACEB]
41201
41276
+
Thr
CGT
[ENA]
¡û
>W09134373
ACSH01000015
Actinomycetota
Corynebacterium matruchotii ATCC 14266 [ACSH]
91916
91841
-
Thr
CGT
[ENA]
¡û
>C191209552
LR134377
Actinomycetota
Corynebacterium kutscheri NCTC949 [LR134377]
514588
514513
-
Thr
CGT
-
¡û
>C191209728
LR134381
Actinomycetota
Corynebacterium kutscheri NCTC11138 [LR134381]
1977763
1977838
+
Thr
CGT
-
¡û
>C191210910
LR134407
Actinomycetota
Corynebacterium kutscheri NCTC3655 [LR134407]
1564131
1564056
-
Thr
CGT
-
¡û
>C191213049
LR134504
Actinomycetota
Corynebacterium matruchotii NCTC10206 [LR134504]
1046582
1046507
-
Thr
CGT
-
¡û
>W1810886013
QUNT01000001
Actinomycetota
Agromyces sp. OV568 [QUNT]
181381
181456
+
Thr
CGT
[ENA]
¡û
>C151079746
CP011312
Actinomycetota
Corynebacterium kutscheri DSM 20755 [CP011312]
212788
212863
+
Thr
CGT
[Ensembl]
¡û
>W1510015638
BBRE01000001
Actinomycetota
Demequina oxidasica NBRC 106264 [BBRE]
1512311
1512386
+
Thr
CGT
[ENA]
¡û
>W121124873
BAFP01000008
Actinomycetota
Nocardia abscessus NBRC 100374 [BAFP]
23802
23877
+
Thr
CGT
[ENA]
¡û
>W1610726701
LMFU01000002
Actinomycetota
Agromyces sp. Root1464 [LMFU]
1098238
1098163
-
Thr
CGT
[ENA]
¡û
>W1710570904
FOVM01000001
Actinomycetota
Mycetocola miduiensis [FOVM]
71819
71744
-
Thr
CGT
[ENA]
¡û
>W1710570905
FOVM01000001
Actinomycetota
Mycetocola miduiensis [FOVM]
63400
63325
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK