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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287557 (79 seq.)
>W1710882894
LMVE01000081
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
78578
78506
-
Phe
GAA
[ENA]
¡û
>W1711116534
LUBZ01000014
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
51886
51814
-
Phe
GAA
[ENA]
¡û
>W1711335602
MBQX01000132
Cyanobacteriota
Cylindrospermopsis raciborskii CS-508 [MBQX]
47699
47627
-
Phe
GAA
[ENA]
¡û
>W1711335642
MBQY01000073
Cyanobacteriota
Cylindrospermopsis raciborskii MVCC14 [MBQY]
59652
59580
-
Phe
GAA
[ENA]
¡û
>W1711711296
MTAV01000012
Cyanobacteriota
Nostoc sp. T09 [MTAV]
14747
14819
+
Phe
GAA
[ENA]
¡û
>W1711711475
MTAX01000148
Cyanobacteriota
Nostoc sp. RF31YmG RF31Y [MTAX]
3582
3654
+
Phe
GAA
[ENA]
¡û
>W1711979746
NDGV01000012
Cyanobacteriota
cyanobacterium TDX16 [NDGV]
24820
24892
+
Phe
GAA
[ENA]
¡û
>C007404
CP000239
Cyanobacteriota
Synechococcus sp. JA-3-3Ab [CP000239]
1345192
1345120
-
Phe
GAA
[Ensembl]
¡û
>WENV182644291
OJLW01019762
[OJLW] metagenome; surface
646
574
-
Phe
GAA
[ENA]
¢þ
>WENV183635718
OOIX01000004
[OOIX] human gut metagenome; mucous membran biopsy from the gut
58
130
+
Phe
GAA
[ENA]
¢þ
>WENV183702617
PDVI01008523
[PDVI] alkali sediment metagenome; glacial lake sediment
168
240
+
Phe
GAA
[ENA]
¢þ
>WENV170000552
AFSR01000227
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
10194
10122
-
Phe
GAA
[ENA]
¢þ
>CHL1810000027
AB480043
Viridiplantae
Cedrus deodara (AB480043)
16908
16836
-
Phe
GAA
[ENA]
¡û
>CHL1810000080
AB501189
Viridiplantae
Larix decidua (AB501189)
37225
37153
-
Phe
GAA
[ENA]
¡û
>CHL1810000143
AB830884
Viridiplantae
Agathis dammara (AB830884)
50221
50293
+
Phe
GAA
[ENA]
¡û
>CHL1810000170
AB830885
Viridiplantae
Nageia nagi (AB830885)
47695
47767
+
Phe
GAA
[ENA]
¡û
>CHL1810000444
AP012265
Viridiplantae
Cephalotaxus wilsoniana (AP012265)
65694
65766
+
Phe
GAA
[ENA]
¡û
>CHL1810001517
EU998740
Viridiplantae
Pinus contorta (EU998740)
67879
67807
-
Phe
GAA
[ENA]
¡û
>CHL1810001542
EU998741
Viridiplantae
Pinus gerardiana (EU998741)
67174
67102
-
Phe
GAA
[ENA]
¡û
>CHL1810001565
EU998742
Viridiplantae
Pinus krempfii (EU998742)
67021
66949
-
Phe
GAA
[ENA]
¡û
>CHL1810001612
EU998745
Viridiplantae
Pinus monophylla (EU998745)
66939
66867
-
Phe
GAA
[ENA]
¡û
>CHL1810002841
HF937082
Viridiplantae
Picea abies (HF937082)
69735
69663
-
Phe
GAA
[ENA]
¡û
>CHL1810005174
JN867588
Viridiplantae
Cycas revoluta (JN867588)
65595
65523
-
Phe
GAA
[ENA]
¡û
>CHL1810006015
JX402774
Viridiplantae
Bowenia serrulata (JX402774)
116552
116480
-
Phe
GAA
[ENA]
¡û
>CHL1810006044
JX407108
Viridiplantae
Ceratozamia hildae (JX407108)
116818
116746
-
Phe
GAA
[ENA]
¡û
>CHL1810006057
JX416857
Viridiplantae
Zamia furfuracea (JX416857)
49978
50050
+
Phe
GAA
[ENA]
¡û
>CHL1810006711
KC117178
Viridiplantae
Ophioglossum californicum (KC117178)
64148
64220
+
Phe
GAA
[ENA]
¡û
>CHL1810006762
KC136217
Viridiplantae
Cephalotaxus oliveri (KC136217)
65234
65306
+
Phe
GAA
[ENA]
¡û
>CHL1810006811
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
50565
50637
+
Phe
GAA
[ENA]
¡û
>CHL1810007889
KC306742
Viridiplantae
Podocarpus totara (KC306742)
30635
30563
-
Phe
GAA
[ENA]
¡û
>CHL1810007999
KC427272
Viridiplantae
Pinus massoniana (KC427272)
67732
67660
-
Phe
GAA
[ENA]
¡û
>CHL1810008485
KC536646
Viridiplantae
Marsilea crenata (KC536646)
50663
50735
+
Phe
GAA
[ENA]
¡û
>CHL1810011901
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
52238
52310
+
Phe
GAA
[ENA]
¡û
>CHL1810017028
KP259800
Viridiplantae
Wollemia nobilis (KP259800)
113186
113114
-
Phe
GAA
[ENA]
¡û
>CHL1810017891
KP742350
Viridiplantae
Abies koreana (KP742350)
67778
67706
-
Phe
GAA
[ENA]
¡û
>CHL1810018030
KP771703
Viridiplantae
Pinus taiwanensis (KP771703)
67858
67786
-
Phe
GAA
[ENA]
¡û
>CHL1810019128
KR476376
Viridiplantae
Abies sibirica (KR476376)
67768
67696
-
Phe
GAA
[ENA]
¡û
>CHL1810019180
KR476379
Viridiplantae
Pinus sylvestris (KR476379)
67748
67676
-
Phe
GAA
[ENA]
¡û
>CHL1810019650
KT027377
Viridiplantae
Torreya fargesii (KT027377)
48006
48078
+
Phe
GAA
[ENA]
¡û
>CHL1810022371
KT723438
Viridiplantae
Pinus sibirica (KT723438)
65954
65882
-
Phe
GAA
[ENA]
¡û
>CHL1810034989
KX713899
Viridiplantae
Cycas panzhihuaensis (KX713899)
65587
65515
-
Phe
GAA
[ENA]
¡û
>CHL1810040379
KY369757
Viridiplantae
Torreya grandis (KY369757)
48077
48149
+
Phe
GAA
[ENA]
¡û
>CHL1810046822
LC049070
Viridiplantae
Dioon spinulosum (LC049070)
49706
49778
+
Phe
GAA
[ENA]
¡û
>CHL1810046880
LC049336
Viridiplantae
Encephalartos lehmannii (LC049336)
49996
50068
+
Phe
GAA
[ENA]
¡û
>CHL1810046982
LC095866
Viridiplantae
Tsuga chinensis (LC095866)
66360
66288
-
Phe
GAA
[ENA]
¡û
>CHL1810047014
LC095867
Viridiplantae
Pseudolarix amabilis (LC095867)
39374
39302
-
Phe
GAA
[ENA]
¡û
>CHL1810049892
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
160015
159943
-
Phe
GAA
[ENA]
¡û
>CHL1810049916
MF101416
Rhodophyta
Caloglossa monosticha (MF101416)
143626
143554
-
Phe
GAA
[ENA]
¡û
>CHL1810050013
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
150981
150909
-
Phe
GAA
[ENA]
¡û
>CHL1810050138
MF101425
Rhodophyta
Polysiphonia brodiei (MF101425)
148611
148539
-
Phe
GAA
[ENA]
¡û
>CHL1810050239
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
153980
153908
-
Phe
GAA
[ENA]
¡û
>CHL1810050314
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
145453
145381
-
Phe
GAA
[ENA]
¡û
>CHL1810050363
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
143874
143802
-
Phe
GAA
[ENA]
¡û
>CHL1810050516
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
148612
148540
-
Phe
GAA
[ENA]
¡û
>CHL1810054557
MF795085
Viridiplantae
Larix sibirica (MF795085)
37302
37230
-
Phe
GAA
[ENA]
¡û
>C181004773
AP018172
Cyanobacteriota
Calothrix sp. NIES-2098 [AP018172]
5670103
5670031
-
Phe
GAA
-
¡û
>C181078413
CP023278
Cyanobacteriota
Nostoc sp. CENA543 [CP023278]
4841916
4841988
+
Phe
GAA
-
¡û
>W1910002815
AUMZ01000001
Cyanobacteriota
Synechococcus sp. 60AY4M2 [AUMZ]
364491
364563
+
Phe
GAA
[ENA]
¡û
>W1910005521
AXZO01000001
Cyanobacteriota
Synechococcus sp. 65AY6Li [AXZO]
2556814
2556886
+
Phe
GAA
[ENA]
¡û
>C141007947
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
1390492
1390420
-
Phe
GAA
-
¡û
>W1910596327
LAGY01000066
Cyanobacteriota
Nostoc linckia z2 [LAGY]
968
895
-
Phe
GAA
[ENA]
¡û
>W1910805257
MTPU01000010
Cyanobacteriota
Cylindrospermopsis raciborskii CENA302 [MTPU]
58334
58262
-
Phe
GAA
[ENA]
¡û
>W1910943377
NJHX01000102
Cyanobacteriota
Cylindrospermopsis raciborskii S07 [NJHX]
1413
1485
+
Phe
GAA
[ENA]
¡û
>W1911153664
NPIK01000002
Cyanobacteriota
Cylindrospermopsis raciborskii CYLP [NPIK]
1647965
1647893
-
Phe
GAA
[ENA]
¡û
>W1911153703
NPIL01000001
Cyanobacteriota
Cylindrospermopsis raciborskii CYRF [NPIL]
1833699
1833627
-
Phe
GAA
[ENA]
¡û
>CHL090101013
AP009339
Viridiplantae
Cycas taitungensis
49486
49558
+
Phe
GAA
[ENA]
¡û
>CHL090101350
AY178864
Viridiplantae
Adiantum capillus-veneris
45736
45808
+
Phe
GAA
[ENA]
¡û
>CHL090101419
AY228468
Viridiplantae
Pinus koraiensis
66484
66412
-
Phe
GAA
[ENA]
¡û
>W1911638312
PVWL01000001
Cyanobacteriota
Cyanosarcina burmensis burmensis CCALA 770 [PVWL]
6996
7068
+
Phe
GAA
[ENA]
¡û
>W1911638388
PVWM01000729
Cyanobacteriota
Chroococcidiopsis cubana CCALA 043 [PVWM]
3149
3221
+
Phe
GAA
[ENA]
¡û
>W1911641174
PYCI01000055
Cyanobacteriota
Chroococcidiopsis sp. CCALA 051 [PYCI]
5644
5716
+
Phe
GAA
[ENA]
¡û
>W1911741978
QVFW01000002
Cyanobacteriota
Scytonema millei VB511283 [QVFW]
192507
192435
-
Phe
GAA
[ENA]
¡û
>W1810267618
PQWO01000001
Cyanobacteriota
Acaryochloris thomasi RCC1774 [PQWO]
581162
581234
+
Phe
GAA
[ENA]
¡û
>W1810355662
PVMC01000054
Cyanobacteriota
Cylindrospermopsis raciborskii Cr2010 [PVMC]
32509
32581
+
Phe
GAA
[ENA]
¡û
>WENV11100895
AFSR01000227
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
10194
10122
-
Phe
GAA
[ENA]
¡û
>W1511401796
JTJC01000086
Cyanobacteriota
Scytonema millei VB511283 [JTJC]
3083802
3083874
+
Phe
GAA
[ENA]
¡û
>C131004538
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
2453196
2453124
-
Phe
GAA
[Ensembl]
¡û
>W1610744820
LMVE01000081
Cyanobacteriota
Cylindrospermopsis sp. CR12 [LMVE]
78578
78506
-
Phe
GAA
[ENA]
¡û
>W1610927776
LUBZ01000014
Cyanobacteriota
Cylindrospermopsis raciborskii ITEP-A1 [LUBZ]
51886
51814
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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