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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288165 (59 seq.)
>W1710821349
LKST01000003
Actinomycetota
Corynebacterium oculi [LKST]
386869
386944
+
Glu
CTC
[ENA]
¡û
>W1710821350
LKST01000003
Actinomycetota
Corynebacterium oculi [LKST]
387622
387695
+
Glu
CTC
[ENA]
¡û
>W1710944411
LOQS01000038
Actinomycetota
Corynebacterium glutamicum [LOQS]
212097
212172
+
Glu
CTC
[ENA]
¡û
>W1711066596
LSCZ01000011
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
8122
8047
-
Glu
CTC
[ENA]
¡û
>W1711066597
LSCZ01000011
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
289
214
-
Glu
CTC
[ENA]
¡û
>W1711080529
LSRB01000020
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
98332
98257
-
Glu
CTC
[ENA]
¡û
>W1711080530
LSRB01000020
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
90499
90424
-
Glu
CTC
[ENA]
¡û
>W1711096401
LTHS01000041
Actinomycetota
Corynebacterium sp. HMSC077B05 [LTHS]
13944
14019
+
Glu
CTC
[ENA]
¡û
>W1711096402
LTHS01000041
Actinomycetota
Corynebacterium sp. HMSC077B05 [LTHS]
21777
21852
+
Glu
CTC
[ENA]
¡û
>W1711099124
LTKF01000010
Actinomycetota
Corynebacterium sp. HMSC072G08 [LTKF]
4443
4368
-
Glu
CTC
[ENA]
¡û
>W1711099135
LTKF01000047
Actinomycetota
Corynebacterium sp. HMSC072G08 [LTKF]
579
504
-
Glu
CTC
[ENA]
¡û
>W1711108471
LTTU01000004
Actinomycetota
Corynebacterium sp. HMSC065A05 [LTTU]
14310
14385
+
Glu
CTC
[ENA]
¡û
>W1711108472
LTTU01000004
Actinomycetota
Corynebacterium sp. HMSC065A05 [LTTU]
22143
22218
+
Glu
CTC
[ENA]
¡û
>W1711109365
LTUP01000029
Actinomycetota
Corynebacterium sp. HMSC077D10 [LTUP]
286
211
-
Glu
CTC
[ENA]
¡û
>W1711187092
LWOT01000085
Actinomycetota
Corynebacterium sp. HMSC28B08 [LWOT]
15291
15216
-
Glu
CTC
[ENA]
¡û
>W131215674
ATVF01000002
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
118213
118140
-
Glu
CTC
[ENA]
¡û
>W131215676
ATVF01000002
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
117941
117866
-
Glu
CTC
[ENA]
¡û
>W131215677
ATVF01000002
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
117051
116976
-
Glu
CTC
[ENA]
¡û
>C005679
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
1367573
1367648
+
Glu
CTC
[Ensembl]
¡û
>WENV181077048
OEAP01022777
[OEAP] human metagenome; G_DNA_Supragingival plaque
121
196
+
Glu
CTC
[ENA]
¢þ
>WENV183713219
PDWI01129133
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1032
1107
+
Glu
CTC
[ENA]
¢þ
>WENV183720742
PDWJ01043511
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1170
1095
-
Glu
CTC
[ENA]
¢þ
>WENV170014962
AZIC01008399
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
163
88
-
Glu
CTC
[ENA]
¢þ
>WENV170647484
JQIA01030877
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
1554
1629
+
Glu
CTC
[ENA]
¢þ
>C181029629
CP017995
Actinomycetota
Corynebacterium glutamicum C1 [CP017995]
1212654
1212727
+
Glu
CTC
-
¡û
>C181118494
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
2148720
2148793
+
Glu
CTC
-
¡û
>C191114599
CP033897
Actinomycetota
Corynebacterium gerontici W8 [CP033897]
1025199
1025272
+
Glu
CTC
-
¡û
>C191114600
CP033897
Actinomycetota
Corynebacterium gerontici W8 [CP033897]
1025434
1025509
+
Glu
CTC
-
¡û
>C191114672
CP033898
Actinomycetota
Corynebacterium pseudopelargi 812CH [CP033898]
1368375
1368302
-
Glu
CTC
-
¡û
>C191114673
CP033898
Actinomycetota
Corynebacterium pseudopelargi 812CH [CP033898]
1366653
1366578
-
Glu
CTC
-
¡û
>C191138577
CP035299
Actinomycetota
Corynebacterium pelargi 136/3 [CP035299]
1367940
1367867
-
Glu
CTC
-
¡û
>C191138578
CP035299
Actinomycetota
Corynebacterium pelargi 136/3 [CP035299]
1366201
1366126
-
Glu
CTC
-
¡û
>C141004145
CP005959
Actinomycetota
Corynebacterium glutamicum MB001 [CP005959]
1370470
1370545
+
Glu
CTC
[Ensembl]
¡û
>W1910438341
FWCI01000016
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
107643
107570
-
Glu
CTC
[ENA]
¡û
>W1910438342
FWCI01000016
Actinomycetota
Corynebacterium pacaense Marseille-P2417 [FWCI]
106779
106704
-
Glu
CTC
[ENA]
¡û
>W1911498429
OCTS01000001
Actinomycetota
Corynebacterium dentalis Marseille-P4122 [OCTS]
109448
109375
-
Glu
CTC
[ENA]
¡û
>W1911498430
OCTS01000001
Actinomycetota
Corynebacterium dentalis Marseille-P4122 [OCTS]
88204
88129
-
Glu
CTC
[ENA]
¡û
>C151069895
CP010451
Actinomycetota
Corynebacterium glutamicum B253 [CP010451]
1436757
1436832
+
Glu
CTC
[Ensembl]
¡û
>C151084388
CP011542
Actinomycetota
Corynebacterium mustelae DSM 45274 [CP011542]
1515234
1515307
+
Glu
CTC
[Ensembl]
¡û
>C151084389
CP011542
Actinomycetota
Corynebacterium mustelae DSM 45274 [CP011542]
1516984
1517059
+
Glu
CTC
[Ensembl]
¡û
>W1511357109
JRVJ01000005
Actinomycetota
Corynebacterium auriscanis CIP 106629 [JRVJ]
10846
10771
-
Glu
CTC
[ENA]
¡û
>C161089874
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
1316651
1316726
+
Glu
CTC
[Ensembl]
¡û
>W1610069796
BCSU01000002
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
110588
110661
+
Glu
CTC
[ENA]
¡û
>W1610069797
BCSU01000002
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
111360
111435
+
Glu
CTC
[ENA]
¡û
>C131005350
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
1656002
1655929
-
Glu
CTC
[Ensembl]
¡û
>C131005351
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
1654695
1654620
-
Glu
CTC
[Ensembl]
¡û
>C131013472
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
1274504
1274577
+
Glu
CTC
[Ensembl]
¡û
>C131013474
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
1274776
1274851
+
Glu
CTC
[Ensembl]
¡û
>C131013475
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
1275666
1275741
+
Glu
CTC
[Ensembl]
¡û
>C131019752
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
1367572
1367647
+
Glu
CTC
[Ensembl]
¡û
>W1610685311
LKST01000003
Actinomycetota
Corynebacterium oculi [LKST]
386869
386944
+
Glu
CTC
[ENA]
¡û
>W1610685312
LKST01000003
Actinomycetota
Corynebacterium oculi [LKST]
387622
387695
+
Glu
CTC
[ENA]
¡û
>W1610907166
LSCZ01000011
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
8122
8047
-
Glu
CTC
[ENA]
¡û
>W1610907167
LSCZ01000011
Actinomycetota
Corynebacterium sp. DNF00584 [LSCZ]
289
214
-
Glu
CTC
[ENA]
¡û
>W1610919396
LSRB01000020
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
98332
98257
-
Glu
CTC
[ENA]
¡û
>W1610919397
LSRB01000020
Actinomycetota
Corynebacterium sp. CMW7794 [LSRB]
90499
90424
-
Glu
CTC
[ENA]
¡û
>W1710067169
BCSU01000002
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
110588
110661
+
Glu
CTC
[ENA]
¡û
>W1710067170
BCSU01000002
Actinomycetota
Corynebacterium humireducens NBRC 106098 = DSM 45392 [BCSU]
111360
111435
+
Glu
CTC
[ENA]
¡û
>W1710608171
FXAR01000005
Actinomycetota
Corynebacterium pollutisoli [FXAR]
81957
81884
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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