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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2882 (7 seq.)
>WENV180247285
OBEQ010012059
[OBEQ] groundwater metagenome; groundwater
716
811
+
SeC
TCA
[ENA]
¡û
>WENV180257414
OBEQ010907506
[OBEQ] groundwater metagenome; groundwater
758
853
+
SeC
TCA
[ENA]
¡û
>WENV180266948
OBEQ011801050
[OBEQ] groundwater metagenome; groundwater
263
358
+
SeC
TCA
[ENA]
¡û
>WENV180292342
OBIV01402764
[OBIV] soil metagenome; Clay
235
140
-
SeC
TCA
[ENA]
¡û
>WENV183684279
ORMF010687620
[ORMF] groundwater metagenome; groundwater
403
308
-
SeC
TCA
[ENA]
¡û
>WENV183685454
ORMF010852099
[ORMF] groundwater metagenome; groundwater
132
37
-
SeC
TCA
[ENA]
¡û
>WENV183690604
ORMF011623698
[ORMF] groundwater metagenome; groundwater
402
307
-
SeC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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