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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288474 (9 seq.)
>WENV180971094
ODUU01013881
[ODUU] human metagenome; G_DNA_Stool
2894
2817
-
Pro
GGG
[ENA]
¡û
>WENV181692162
OGOZ01075504
[OGOZ] human gut metagenome; faeces
196
119
-
Pro
GGG
[ENA]
¡û
>WENV182399294
OIEN01049700
[OIEN] human gut metagenome; human gut
675
752
+
Pro
GGG
[ENA]
¡û
>WENV182417563
OIGD01031602
[OIGD] human gut metagenome; human gut
1189
1112
-
Pro
GGG
[ENA]
¡û
>WENV182965160
OKWR01034493
[OKWR] human gut metagenome; human gut
513
436
-
Pro
GGG
[ENA]
¡û
>WENV183359003
OLXH01003957
[OLXH] human gut metagenome; feces
4253
4176
-
Pro
GGG
[ENA]
¡û
>WENV183652949
OQVZ01001051
[OQVZ] human gut metagenome; human gut
8608
8531
-
Pro
GGG
[ENA]
¡û
>WENV183656348
OQWE01020222
[OQWE] human gut metagenome; human gut
580
503
-
Pro
GGG
[ENA]
¡û
>WENV170638239
JFBN01450514
[JFBN] chicken gut metagenome; ceca of Broiler chicken
490
567
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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