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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288517 (23 seq.)
>WENV180206749
OBAI01000931
[OBAI] human gut metagenome; human gut
18479
18554
+
Glu
CTC
[ENA]
¡û
>WENV180324396
OBKS01000001
[OBKS] human gut metagenome; human gut
204401
204476
+
Glu
CTC
[ENA]
¡û
>WENV180329254
OBKV01000524
[OBKV] human gut metagenome; human gut
25203
25128
-
Glu
CTC
[ENA]
¡û
>WENV180339417
OBLI01004179
[OBLI] pig gut metagenome; faeces
5417
5492
+
Glu
CTC
[ENA]
¡û
>WENV180577835
OCMB01000302
[OCMB] human gut metagenome; human gut
3575
3500
-
Glu
CTC
[ENA]
¡û
>WENV180683367
OCVV012839048
[OCVV] gut metagenome; gut
75606
75531
-
Glu
CTC
[ENA]
¡û
>WENV180683368
OCVV012839048
[OCVV] gut metagenome; gut
75606
75531
-
Glu
CTC
[ENA]
¡û
>WENV181608139
OGLM01066841
[OGLM] metagenome; Human gut stool
234
159
-
Glu
CTC
[ENA]
¡û
>WENV181656063
OGOB01017338
[OGOB] metagenome; Human gut stool
472
397
-
Glu
CTC
[ENA]
¡û
>WENV181672876
OGOO01000451
[OGOO] human gut metagenome; faeces
16485
16410
-
Glu
CTC
[ENA]
¡û
>WENV181691140
OGOZ01002670
[OGOZ] human gut metagenome; faeces
2766
2691
-
Glu
CTC
[ENA]
¡û
>WENV181691496
OGOZ01008888
[OGOZ] human gut metagenome; faeces
2823
2898
+
Glu
CTC
[ENA]
¡û
>WENV181715573
OGPS01000249
[OGPS] human gut metagenome; faeces
24453
24378
-
Glu
CTC
[ENA]
¡û
>WENV181788012
OGRO01000248
[OGRO] human gut metagenome; faeces
25254
25179
-
Glu
CTC
[ENA]
¡û
>WENV182189399
OHOO01003487
[OHOO] human gut metagenome; feces
2500
2425
-
Glu
CTC
[ENA]
¡û
>WENV182608632
OJJV01000366
[OJJV] metagenome; faeces
18175
18250
+
Glu
CTC
[ENA]
¡û
>WENV182630031
OJKW01000019
[OJKW] metagenome; faeces
152405
152480
+
Glu
CTC
[ENA]
¡û
>WENV182638722
OJLA01022299
[OJLA] metagenome; faeces
1897
1822
-
Glu
CTC
[ENA]
¡û
>WENV182938891
OKVE01003681
[OKVE] human gut metagenome; human gut
309
384
+
Glu
CTC
[ENA]
¡û
>WENV183127611
OLNZ01000400
[OLNZ] human gut metagenome; faeces
25777
25702
-
Glu
CTC
[ENA]
¡û
>WENV183160441
OLOV01000223
[OLOV] human gut metagenome; faeces
22285
22360
+
Glu
CTC
[ENA]
¡û
>WENV183640438
OQVL01004495
[OQVL] human gut metagenome; human gut
4584
4659
+
Glu
CTC
[ENA]
¡û
>WENV183767040
PPYE01359988
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3728
3653
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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