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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288697 (4 seq.)
>WENV181373652
OFQY01000070
[OFQY] wastewater metagenome; Exp Tend VB 10WW
37624
37701
+
Pro
TGG
[ENA]
¡û
>WENV181382114
OFRG01000057
[OFRG] wastewater metagenome; WWTP Verbania (Effluent)
5389
5312
-
Pro
TGG
[ENA]
¡û
>WENV181387315
OFRM01000009
[OFRM] wastewater metagenome; Exp Tend VB 0WW
68262
68339
+
Pro
TGG
[ENA]
¡û
>WENV181398719
OFSE01001112
[OFSE] wastewater metagenome; Exp Tend VB 50WW
2612
2689
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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