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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288728 (103 seq.)
>WENV180156604
OAUV01046671
[OAUV] human gut metagenome; faeces
362
288
-
Ala
TGC
[ENA]
¢þ
>WENV180175956
OAWC01004715
[OAWC] human gut metagenome; faeces
2018
1944
-
Ala
TGC
[ENA]
¢þ
>WENV180328397
OBKU01022011
[OBKU] human gut metagenome; human gut
467
393
-
Ala
TGC
[ENA]
¢þ
>WENV180444363
OBWZ01001923
[OBWZ] human gut metagenome; faeces
2894
2819
-
Ala
TGC
[ENA]
¢þ
>WENV180480540
OBZD01005168
[OBZD] human gut metagenome; faeces
219
294
+
Ala
TGC
[ENA]
¢þ
>WENV180526921
OCHI01107584
[OCHI] human gut metagenome; human gut
409
334
-
Ala
TGC
[ENA]
¢þ
>WENV180718255
ODGF01017508
[ODGF] human metagenome; G_DNA_Throat
161
86
-
Ala
TGC
[ENA]
¢þ
>WENV180728419
ODGU01048067
[ODGU] human metagenome; G_DNA_Supragingival plaque
77
2
-
Ala
TGC
[ENA]
¢þ
>WENV180728901
ODGU01119645
[ODGU] human metagenome; G_DNA_Supragingival plaque
283
208
-
Ala
TGC
[ENA]
¢þ
>WENV180744508
ODHJ01065648
[ODHJ] human metagenome; G_DNA_Stool
124
198
+
Ala
TGC
[ENA]
¢þ
>WENV180751235
ODHS01032941
[ODHS] human metagenome; G_DNA_Supragingival plaque
504
429
-
Ala
TGC
[ENA]
¢þ
>WENV180807601
ODJI01004683
[ODJI] human metagenome; G_DNA_Tongue dorsum
509
584
+
Ala
TGC
[ENA]
¢þ
>WENV180833498
ODKC01065696
[ODKC] human metagenome; G_DNA_Supragingival plaque
9
84
+
Ala
TGC
[ENA]
¢þ
>WENV180847130
ODKT01044494
[ODKT] human metagenome; G_DNA_Supragingival plaque
620
695
+
Ala
TGC
[ENA]
¢þ
>WENV180858726
ODLC01026611
[ODLC] human metagenome; G_DNA_Tongue dorsum
214
139
-
Ala
TGC
[ENA]
¢þ
>WENV180928084
ODTM01013941
[ODTM] human metagenome; G_DNA_Supragingival plaque
1887
1812
-
Ala
TGC
[ENA]
¢þ
>WENV180939843
ODTX01105484
[ODTX] human metagenome; G_DNA_Supragingival plaque
208
283
+
Ala
TGC
[ENA]
¢þ
>WENV180945064
ODUC01065088
[ODUC] human metagenome; G_DNA_Supragingival plaque
648
573
-
Ala
TGC
[ENA]
¢þ
>WENV180951753
ODUH01051107
[ODUH] human metagenome; G_DNA_Subgingival plaque
714
639
-
Ala
TGC
[ENA]
¢þ
>WENV180957299
ODUK01027185
[ODUK] human metagenome; G_DNA_Stool
325
399
+
Ala
TGC
[ENA]
¢þ
>WENV180966964
ODUS01000710
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
2353
2278
-
Ala
TGC
[ENA]
¢þ
>WENV181077013
OEAP01021417
[OEAP] human metagenome; G_DNA_Supragingival plaque
1834
1759
-
Ala
TGC
[ENA]
¢þ
>WENV181080896
OEAS01095801
[OEAS] human metagenome; G_DNA_Supragingival plaque
583
658
+
Ala
TGC
[ENA]
¢þ
>WENV181084983
OEAX01000771
[OEAX] human metagenome; G_DNA_Tongue dorsum
13945
13870
-
Ala
TGC
[ENA]
¢þ
>WENV181085671
OEAX01034150
[OEAX] human metagenome; G_DNA_Tongue dorsum
200
275
+
Ala
TGC
[ENA]
¢þ
>WENV181118628
OEFH01022317
[OEFH] human metagenome; G_DNA_Stool
326
400
+
Ala
TGC
[ENA]
¢þ
>WENV181136787
OEGI01060404
[OEGI] human metagenome; G_DNA_Supragingival plaque
440
365
-
Ala
TGC
[ENA]
¢þ
>WENV181146957
OEHQ01049054
[OEHQ] human metagenome; G_DNA_Supragingival plaque
463
388
-
Ala
TGC
[ENA]
¢þ
>WENV181151295
OEHW01035102
[OEHW] human metagenome; G_DNA_Tongue dorsum
573
498
-
Ala
TGC
[ENA]
¢þ
>WENV181159102
OEIH01047032
[OEIH] human metagenome; G_DNA_Supragingival plaque
205
280
+
Ala
TGC
[ENA]
¢þ
>WENV181182132
OEJV01002773
[OEJV] human metagenome; G_DNA_Supragingival plaque
937
862
-
Ala
TGC
[ENA]
¢þ
>WENV181283917
OFGQ01047013
[OFGQ] mouse gut metagenome; faeces
906
832
-
Ala
TGC
[ENA]
¢þ
>WENV181517400
OGGZ01006436
[OGGZ] metagenome; Human gut stool
4742
4667
-
Ala
TGC
[ENA]
¢þ
>WENV181630117
OGMP01035576
[OGMP] metagenome; Human gut stool
218
292
+
Ala
TGC
[ENA]
¢þ
>WENV181747565
OGQN01051860
[OGQN] human gut metagenome; faeces
801
727
-
Ala
TGC
[ENA]
¢þ
>WENV181803534
OGSD01021021
[OGSD] human gut metagenome; faeces
272
346
+
Ala
TGC
[ENA]
¢þ
>WENV181804154
OGSE01001885
[OGSE] human gut metagenome; fecal sample 3 from infant 2
676
601
-
Ala
TGC
[ENA]
¢þ
>WENV181806018
OGSJ01005388
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
1005
930
-
Ala
TGC
[ENA]
¢þ
>WENV181806025
OGSJ01005747
[OGSJ] human gut metagenome; fecal sample 6 from infant 6
259
184
-
Ala
TGC
[ENA]
¢þ
>WENV182006679
OHBF01031388
[OHBF] human gut metagenome; feces
86
160
+
Ala
TGC
[ENA]
¢þ
>WENV182098122
OHHP01027857
[OHHP] human gut metagenome; feces
224
298
+
Ala
TGC
[ENA]
¢þ
>WENV182329724
OHZE01022061
[OHZE] human gut metagenome; feces
227
301
+
Ala
TGC
[ENA]
¢þ
>WENV182359490
OIBX01017402
[OIBX] human gut metagenome; feces
801
727
-
Ala
TGC
[ENA]
¢þ
>WENV182368238
OICM01028249
[OICM] human gut metagenome; feces
167
241
+
Ala
TGC
[ENA]
¢þ
>WENV182390833
OIEE01043644
[OIEE] human gut metagenome; human gut
546
471
-
Ala
TGC
[ENA]
¢þ
>WENV182645862
OJLZ01006425
[OJLZ] metagenome; surface
2248
2173
-
Ala
TGC
[ENA]
¢þ
>WENV182803529
OJUL01002702
[OJUL] human gut metagenome; human gut
2209
2134
-
Ala
TGC
[ENA]
¢þ
>WENV182814006
OJYG01003360
[OJYG] human gut metagenome; human gut
717
642
-
Ala
TGC
[ENA]
¢þ
>WENV182819223
OKAA01004792
[OKAA] human gut metagenome; human gut
717
642
-
Ala
TGC
[ENA]
¢þ
>WENV182823242
OKBS01001363
[OKBS] human gut metagenome; human gut
199
124
-
Ala
TGC
[ENA]
¢þ
>WENV182842671
OKIF01000433
[OKIF] human gut metagenome; human gut
2900
2975
+
Ala
TGC
[ENA]
¢þ
>WENV182859230
OKOL01001668
[OKOL] human gut metagenome; human gut
2764
2689
-
Ala
TGC
[ENA]
¢þ
>WENV182860469
OKOW01000590
[OKOW] human gut metagenome; human gut
1971
2046
+
Ala
TGC
[ENA]
¢þ
>WENV182900339
OKST01035369
[OKST] human gut metagenome; feces
494
420
-
Ala
TGC
[ENA]
¢þ
>WENV183236525
OLQX01005145
[OLQX] human gut metagenome; faeces
716
791
+
Ala
TGC
[ENA]
¢þ
>WENV183240855
OLRA01021411
[OLRA] human gut metagenome; faeces
81
156
+
Ala
TGC
[ENA]
¢þ
>WENV183294650
OLSK01046861
[OLSK] human gut metagenome; faeces
494
420
-
Ala
TGC
[ENA]
¢þ
>WENV183324638
OLVY01032133
[OLVY] human gut metagenome; feces
918
844
-
Ala
TGC
[ENA]
¢þ
>WENV183507806
OMGY01073906
[OMGY] human gut metagenome; human gut
29
101
+
Ala
TGC
[ENA]
¢þ
>W141451999
JFBQ01000012
Bacillota
Clostridium sporogenes [JFBQ]
28764
28689
-
Ala
TGC
[ENA]
¡û
>W141460550
JFGA01000756
Bacillota
Clostridium botulinum [JFGA]
2446
2371
-
Ala
TGC
[ENA]
¡û
>W141460578
JFGA01001031
Bacillota
Clostridium botulinum [JFGA]
344
269
-
Ala
TGC
[ENA]
¡û
>W141460581
JFGA01001035
Bacillota
Clostridium botulinum [JFGA]
925
850
-
Ala
TGC
[ENA]
¡û
>C181012877
CP013242
Bacillota
Clostridium sporogenes CDC_67071 [CP013242]
3567683
3567758
+
Ala
TGC
-
¡û
>C181012913
CP013242
Bacillota
Clostridium sporogenes CDC_67071 [CP013242]
3411428
3411353
-
Ala
TGC
-
¡û
>C181013911
CP013850
Bacillota
Clostridium botulinum B305 [CP013850]
15324
15399
+
Ala
TGC
-
¡û
>C181013929
CP013850
Bacillota
Clostridium botulinum B305 [CP013850]
490808
490883
+
Ala
TGC
-
¡û
>C181013954
CP013850
Bacillota
Clostridium botulinum B305 [CP013850]
3916295
3916220
-
Ala
TGC
-
¡û
>C181195266
CP031097
Bacillota
Clostridium botulinum CFSAN034200 [CP031097]
2605758
2605833
+
Ala
TGC
-
¡û
>C181195269
CP031097
Bacillota
Clostridium botulinum CFSAN034200 [CP031097]
2610989
2611064
+
Ala
TGC
-
¡û
>C181195308
CP031097
Bacillota
Clostridium botulinum CFSAN034200 [CP031097]
2455657
2455582
-
Ala
TGC
-
¡û
>W141557396
JHVC01000030
Bacillota
Clostridium lundense DSM 17049 [JHVC]
31462
31387
-
Ala
TGC
[ENA]
¡û
>W141557408
JHVC01000054
Bacillota
Clostridium lundense DSM 17049 [JHVC]
14
89
+
Ala
TGC
[ENA]
¡û
>W10113456
ADGE01000001
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
185
260
+
Ala
TGC
[ENA]
¡û
>W10113496
ADGE01000042
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
255
180
-
Ala
TGC
[ENA]
¡û
>C11106367
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
571551
571626
+
Ala
TGC
[Ensembl]
¡û
>C11106375
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
1098501
1098576
+
Ala
TGC
[Ensembl]
¡û
>C11106382
FP565809
Bacillota
Acetoanaerobium sticklandii DSM 519 [FP565809]
2513931
2513856
-
Ala
TGC
[Ensembl]
¡û
>C11108986
CP002390
Bacillota
Filifactor alocis ATCC 35896 [CP002390]
1141011
1140936
-
Ala
TGC
[Ensembl]
¡û
>C11109021
CP002390
Bacillota
Filifactor alocis ATCC 35896 [CP002390]
716091
716016
-
Ala
TGC
[Ensembl]
¡û
>W11116745
ADGE01000001
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
185
260
+
Ala
TGC
[ENA]
¡û
>W11116785
ADGE01000042
Bacillota
Filifactor alocis ATCC 35896 [ADGE]
255
180
-
Ala
TGC
[ENA]
¡û
>W1511345260
JRGH01000021
Bacillota
Clostridium tetani ATCC 9441 [JRGH]
378
303
-
Ala
TGC
[ENA]
¡û
>W1511345263
JRGH01000022
Bacillota
Clostridium tetani ATCC 9441 [JRGH]
112
187
+
Ala
TGC
[ENA]
¡û
>W1511345307
JRGI01000020
Bacillota
Clostridium tetani ATCC 453 [JRGI]
335
410
+
Ala
TGC
[ENA]
¡û
>W1511345312
JRGI01000037
Bacillota
Clostridium tetani ATCC 453 [JRGI]
121
196
+
Ala
TGC
[ENA]
¡û
>W1511565924
LAGG01000092
Bacillota
Clostridium sporogenes CDC24442 [LAGG]
275
350
+
Ala
TGC
[ENA]
¡û
>W1511699336
LGIL01000005
Bacillota
Clostridium botulinum ATCC 7949 [LGIL]
316
241
-
Ala
TGC
[ENA]
¡û
>W1511699349
LGIL01000015
Bacillota
Clostridium botulinum ATCC 7949 [LGIL]
203
278
+
Ala
TGC
[ENA]
¡û
>W1511699374
LGIL01000030
Bacillota
Clostridium botulinum ATCC 7949 [LGIL]
28419
28344
-
Ala
TGC
[ENA]
¡û
>W121007117
AFZE01000003
Bacillota
Peptoanaerobacter stomatis ACC19a [AFZE]
59
134
+
Ala
TGC
[ENA]
¡û
>W121007140
AFZE01000035
Bacillota
Peptoanaerobacter stomatis ACC19a [AFZE]
8837
8762
-
Ala
TGC
[ENA]
¡û
>W121007141
AFZE01000039
Bacillota
Peptoanaerobacter stomatis ACC19a [AFZE]
411
336
-
Ala
TGC
[ENA]
¡û
>W121007166
AFZF01000011
Bacillota
Peptoanaerobacter stomatis CM2 [AFZF]
5522
5597
+
Ala
TGC
[ENA]
¡û
>W121007187
AFZF01000024
Bacillota
Peptoanaerobacter stomatis CM2 [AFZF]
8732
8657
-
Ala
TGC
[ENA]
¡û
>W121007206
AFZF01000037
Bacillota
Peptoanaerobacter stomatis CM2 [AFZF]
180
255
+
Ala
TGC
[ENA]
¡û
>W121007224
AFZG01000004
Bacillota
Peptoanaerobacter stomatis CM5 [AFZG]
215
290
+
Ala
TGC
[ENA]
¡û
>W121007225
AFZG01000010
Bacillota
Peptoanaerobacter stomatis CM5 [AFZG]
291
216
-
Ala
TGC
[ENA]
¡û
>W121007227
AFZG01000018
Bacillota
Peptoanaerobacter stomatis CM5 [AFZG]
15776
15701
-
Ala
TGC
[ENA]
¡û
>W121111541
ALJM01000034
Bacillota
Peptostreptococcaceae bacterium AS15 AS15 [ALJM]
12004
11929
-
Ala
TGC
[ENA]
¡û
>W121112568
ALNK01000007
Bacillota
Peptoanaerobacter stomatis OBRC8 [ALNK]
2942
3017
+
Ala
TGC
[ENA]
¡û
>W1611063128
MBEW01000005
Bacillota
Criibacterium bergeronii CCRI-22567 [MBEW]
2758
2683
-
Ala
TGC
[ENA]
¡û
>ENV003824
DQ011255
Environmental sample from ENV division of INSDC
1370
1447
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK