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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288762 (46 seq.)
>W131051978
AMYG01000037
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
11434
11509
+
Pro
GGG
[ENA]
¡û
>W131167571
ARDJ01000017
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
4597
4522
-
Pro
GGG
[ENA]
¡û
>C025833
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
1568952
1569027
+
Pro
GGG
[Ensembl]
¡û
>w018966
AATV01000002
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
87756
87679
-
Pro
GGG
[ENA]
¡û
>w010192
AAKQ01000009
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
19353
19430
+
Pro
GGG
[ENA]
¡û
>W141092600
AVAF01000114
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
46224
46299
+
Pro
GGG
[ENA]
¡û
>WENV181226171
OFDK01000147
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
21613
21688
+
Pro
GGG
[ENA]
¢þ
>WENV181404256
OGBZ01007350
[OGBZ] sediment metagenome; hot spring sediment
443
518
+
Pro
GGG
[ENA]
¢þ
>W141153117
AXDC01000005
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
26890
26815
-
Pro
GGG
[ENA]
¡û
>C08010976
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
1991628
1991556
-
Pro
GGG
[Ensembl]
¡û
>C08011055
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
892199
892274
+
Pro
GGG
[Ensembl]
¡û
>W141276485
JADV01000015
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
37250
37325
+
Pro
GGG
[ENA]
¡û
>WENV170675667
LDZP01000191
[LDZP] terrestrial metagenome; oil reservoir sample I1
17066
17141
+
Pro
GGG
[ENA]
¢þ
>WENV170676234
LDZR01001825
[LDZR] terrestrial metagenome; oil reservoir sample K2
1297
1372
+
Pro
GGG
[ENA]
¢þ
>WENV170676890
LDZS01003043
[LDZS] terrestrial metagenome; oil reservoir sample K3
3249
3174
-
Pro
GGG
[ENA]
¢þ
>C191108140
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2109883
2109808
-
Pro
GGG
-
¡û
>W09112155
ABXP01000184
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
11045
10970
-
Pro
GGG
[ENA]
¡û
>W09133523
ACPF01000018
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
24424
24349
-
Pro
GGG
[ENA]
¡û
>W09134149
ACQZ01000039
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
4410
4335
-
Pro
GGG
[ENA]
¡û
>W09135039
ACVH01000002
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
87415
87490
+
Pro
GGG
[ENA]
¡û
>W09135138
ACVK01000002
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
44744
44669
-
Pro
GGG
[ENA]
¡û
>W09135850
ACXP01000011
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
24425
24350
-
Pro
GGG
[ENA]
¡û
>C151045333
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1449744
1449669
-
Pro
GGG
[Ensembl]
¡û
>W10105936
ACXY01000018
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
27671
27746
+
Pro
GGG
[ENA]
¡û
>W10120500
ADXD01000050
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
17745
17820
+
Pro
GGG
[ENA]
¡û
>C10113415
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1469331
1469256
-
Pro
GGG
[Ensembl]
¡û
>C10113472
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1440322
1440247
-
Pro
GGG
[Ensembl]
¡û
>W11108259
ACXY01000018
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
27671
27746
+
Pro
GGG
[ENA]
¡û
>W1511275096
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
823944
823869
-
Pro
GGG
[ENA]
¡û
>C11122482
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
884392
884467
+
Pro
GGG
[Ensembl]
¡û
>C11122715
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
962716
962791
+
Pro
GGG
[Ensembl]
¡û
>C11123269
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1574741
1574666
-
Pro
GGG
[Ensembl]
¡û
>W11127109
ADXD01000050
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
17745
17820
+
Pro
GGG
[ENA]
¡û
>W11152687
AEYS01000039
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
1445
1370
-
Pro
GGG
[ENA]
¡û
>W121068124
AJUD01000016
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
175444
175519
+
Pro
GGG
[ENA]
¡û
>W1610043650
BAZY01000011
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
36910
36985
+
Pro
GGG
[ENA]
¡û
>W1610612299
LGEO01000028
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
17066
17141
+
Pro
GGG
[ENA]
¡û
>W1610612636
LGEY01000017
Bacillota
Caldanaerobacter subterraneus [LGEY]
1297
1372
+
Pro
GGG
[ENA]
¡û
>W1610613186
LGFN01000147
Bacillota
Caldanaerobacter subterraneus [LGFN]
3249
3174
-
Pro
GGG
[ENA]
¡û
>W1710040810
BAZY01000011
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
36910
36985
+
Pro
GGG
[ENA]
¡û
>W1710515330
FNBS01000041
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
4569
4494
-
Pro
GGG
[ENA]
¡û
>W1710560365
FONI01000013
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
46765
46840
+
Pro
GGG
[ENA]
¡û
>W1710583308
FQUR01000010
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
149175
149250
+
Pro
GGG
[ENA]
¡û
>W1710733805
LGEO01000028
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
17066
17141
+
Pro
GGG
[ENA]
¡û
>W1710733957
LGEY01000017
Bacillota
Caldanaerobacter subterraneus [LGEY]
1297
1372
+
Pro
GGG
[ENA]
¡û
>W1710734393
LGFN01000147
Bacillota
Caldanaerobacter subterraneus [LGFN]
3249
3174
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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