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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288876 (100 seq.)
>W1711111035
LTWB01000128
Fusobacteriota
Fusobacterium sp. HMSC065F01 [LTWB]
9480
9405
-
His
GTG
[ENA]
¡û
>W1712084819
NHRT01000001
Fusobacteriota
Fusobacterium polymorphum subsp. polymorphum [NHRT]
2063837
2063912
+
His
GTG
[ENA]
¡û
>C009462
AE009951
Fusobacteriota
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 [AE009951]
461458
461383
-
His
GTG
[Ensembl]
¡û
>WENV180241130
OBDF01035086
[OBDF] human oral metagenome; human oral
37
112
+
His
GTG
[ENA]
¢þ
>WENV180705772
ODEJ01022115
[ODEJ] human metagenome; G_DNA_Tongue dorsum
749
674
-
His
GTG
[ENA]
¢þ
>WENV180717664
ODGE01000448
[ODGE] human metagenome; G_DNA_Buccal mucosa
7950
7875
-
His
GTG
[ENA]
¢þ
>WENV180727619
ODGU01008580
[ODGU] human metagenome; G_DNA_Supragingival plaque
4381
4306
-
His
GTG
[ENA]
¢þ
>WENV180734680
ODGZ01017700
[ODGZ] human metagenome; G_DNA_Supragingival plaque
346
271
-
His
GTG
[ENA]
¢þ
>WENV180739454
ODHD01105147
[ODHD] human metagenome; G_DNA_Supragingival plaque
133
58
-
His
GTG
[ENA]
¢þ
>WENV180774112
ODIJ01008936
[ODIJ] human metagenome; G_DNA_Tongue dorsum
2856
2931
+
His
GTG
[ENA]
¢þ
>WENV180783607
ODIQ01012757
[ODIQ] human metagenome; G_DNA_Tongue dorsum
1469
1394
-
His
GTG
[ENA]
¢þ
>WENV180798019
ODJB01217191
[ODJB] human metagenome; G_DNA_Supragingival plaque
346
271
-
His
GTG
[ENA]
¢þ
>W141078936
ATKD01000002
Fusobacteriota
Fusobacterium animalis subsp. animalis ChDC F324 [ATKD]
14992
14917
-
His
GTG
[ENA]
¡û
>W141078975
ATKE01000020
Fusobacteriota
Fusobacterium hwasookii ChDC F145 [ATKE]
5035
5110
+
His
GTG
[ENA]
¡û
>W141079009
ATKF01000057
Fusobacteriota
Fusobacterium hwasookii ChDC F174 [ATKF]
19934
20009
+
His
GTG
[ENA]
¡û
>WENV180820480
ODJR01008814
[ODJR] human metagenome; G_DNA_Tongue dorsum
1550
1475
-
His
GTG
[ENA]
¢þ
>WENV180831026
ODKB01029804
[ODKB] human metagenome; G_DNA_Tongue dorsum
882
807
-
His
GTG
[ENA]
¢þ
>WENV180853009
ODKW01017590
[ODKW] human metagenome; G_DNA_Tongue dorsum
447
522
+
His
GTG
[ENA]
¢þ
>WENV180855479
ODKX01151686
[ODKX] human metagenome; G_DNA_Tongue dorsum
9
84
+
His
GTG
[ENA]
¢þ
>WENV180864431
ODLH01038467
[ODLH] human metagenome; G_DNA_Tongue dorsum
318
393
+
His
GTG
[ENA]
¢þ
>WENV180924757
ODTK01014690
[ODTK] human metagenome; G_DNA_Supragingival plaque
2070
2145
+
His
GTG
[ENA]
¢þ
>WENV180925130
ODTK01043232
[ODTK] human metagenome; G_DNA_Supragingival plaque
133
58
-
His
GTG
[ENA]
¢þ
>WENV180928306
ODTM01031581
[ODTM] human metagenome; G_DNA_Supragingival plaque
814
889
+
His
GTG
[ENA]
¢þ
>WENV180938643
ODTX01004470
[ODTX] human metagenome; G_DNA_Supragingival plaque
375
300
-
His
GTG
[ENA]
¢þ
>WENV180939853
ODTX01106777
[ODTX] human metagenome; G_DNA_Supragingival plaque
375
300
-
His
GTG
[ENA]
¢þ
>WENV180945750
ODUD01000032
[ODUD] human metagenome; G_DNA_Tongue dorsum
44898
44973
+
His
GTG
[ENA]
¢þ
>WENV180949180
ODUG01009678
[ODUG] human metagenome; G_DNA_Tongue dorsum
393
318
-
His
GTG
[ENA]
¢þ
>WENV180954529
ODUJ01003366
[ODUJ] human metagenome; G_DNA_Tongue dorsum
435
510
+
His
GTG
[ENA]
¢þ
>WENV180973830
ODUW01021414
[ODUW] human metagenome; G_DNA_Supragingival plaque
510
585
+
His
GTG
[ENA]
¢þ
>WENV180975432
ODUY01006279
[ODUY] human metagenome; G_DNA_Supragingival plaque
760
685
-
His
GTG
[ENA]
¢þ
>WENV180985803
ODVJ01018263
[ODVJ] human metagenome; G_DNA_Tongue dorsum
1612
1537
-
His
GTG
[ENA]
¢þ
>WENV180987070
ODVK01004331
[ODVK] human metagenome; G_DNA_Supragingival plaque
183
258
+
His
GTG
[ENA]
¢þ
>WENV180992518
ODVP01022390
[ODVP] human metagenome; G_DNA_Buccal mucosa
59
134
+
His
GTG
[ENA]
¢þ
>WENV180999040
ODVT01004932
[ODVT] human metagenome; G_DNA_Buccal mucosa
4134
4209
+
His
GTG
[ENA]
¢þ
>WENV181005949
ODWA01000248
[ODWA] human metagenome; G_DNA_Buccal mucosa
4780
4855
+
His
GTG
[ENA]
¢þ
>WENV181020862
ODWV01000485
[ODWV] human metagenome; G_DNA_Tongue dorsum
9620
9695
+
His
GTG
[ENA]
¢þ
>WENV181027543
ODXD01007730
[ODXD] human metagenome; G_DNA_Buccal mucosa
831
906
+
His
GTG
[ENA]
¢þ
>WENV181030159
ODXF01053864
[ODXF] human metagenome; G_DNA_Supragingival plaque
314
239
-
His
GTG
[ENA]
¢þ
>WENV181039573
ODXQ01030071
[ODXQ] human metagenome; G_DNA_Tongue dorsum
845
770
-
His
GTG
[ENA]
¢þ
>WENV181042483
ODXU01000266
[ODXU] human metagenome; G_DNA_Buccal mucosa
10578
10503
-
His
GTG
[ENA]
¢þ
>WENV181045675
ODXW01000988
[ODXW] human metagenome; G_DNA_Tongue dorsum
4162
4087
-
His
GTG
[ENA]
¢þ
>WENV181051604
ODYE01000425
[ODYE] human metagenome; G_DNA_Tongue dorsum
7948
7873
-
His
GTG
[ENA]
¢þ
>WENV181058706
ODYL01029337
[ODYL] human metagenome; G_DNA_Tongue dorsum
843
768
-
His
GTG
[ENA]
¢þ
>WENV181062717
ODYO01008224
[ODYO] human metagenome; G_DNA_Palatine Tonsils
381
306
-
His
GTG
[ENA]
¢þ
>WENV181066851
ODZI01002435
[ODZI] human metagenome; G_DNA_Supragingival plaque
3649
3724
+
His
GTG
[ENA]
¢þ
>WENV181069094
ODZZ01011222
[ODZZ] human metagenome; G_DNA_Tongue dorsum
92
167
+
His
GTG
[ENA]
¢þ
>WENV181075198
OEAO01083704
[OEAO] human metagenome; G_DNA_Tongue dorsum
364
289
-
His
GTG
[ENA]
¢þ
>WENV181085387
OEAX01007594
[OEAX] human metagenome; G_DNA_Tongue dorsum
2324
2249
-
His
GTG
[ENA]
¢þ
>WENV181085835
OEAX01107938
[OEAX] human metagenome; G_DNA_Tongue dorsum
7
82
+
His
GTG
[ENA]
¢þ
>WENV181091176
OEBC01016029
[OEBC] human metagenome; G_DNA_Supragingival plaque
1848
1923
+
His
GTG
[ENA]
¢þ
>WENV181091442
OEBC01034343
[OEBC] human metagenome; G_DNA_Supragingival plaque
398
323
-
His
GTG
[ENA]
¢þ
>WENV181107978
OEEI01047524
[OEEI] human metagenome; G_DNA_Supragingival plaque
369
294
-
His
GTG
[ENA]
¢þ
>WENV181113044
OEEL01009635
[OEEL] human metagenome; G_DNA_Tongue dorsum
393
318
-
His
GTG
[ENA]
¢þ
>WENV181115189
OEEO01027031
[OEEO] human metagenome; G_DNA_Supragingival plaque
997
922
-
His
GTG
[ENA]
¢þ
>WENV181140476
OEGN01194945
[OEGN] human metagenome; G_DNA_Tongue dorsum
73
148
+
His
GTG
[ENA]
¢þ
>WENV181146288
OEHQ01002727
[OEHQ] human metagenome; G_DNA_Supragingival plaque
467
542
+
His
GTG
[ENA]
¢þ
>WENV181156023
OEIE01001908
[OEIE] human metagenome; G_DNA_Supragingival plaque
3829
3904
+
His
GTG
[ENA]
¢þ
>WENV181158865
OEIH01013420
[OEIH] human metagenome; G_DNA_Supragingival plaque
1329
1404
+
His
GTG
[ENA]
¢þ
>WENV181180083
OEJT01071911
[OEJT] human metagenome; G_DNA_Supragingival plaque
83
158
+
His
GTG
[ENA]
¢þ
>WENV181427231
OGCQ01048863
[OGCQ] human gut metagenome; human gut
149
224
+
His
GTG
[ENA]
¢þ
>W141157949
AXNW01000034
Fusobacteriota
Fusobacterium nucleatum CTI-5 [AXNW]
59535
59610
+
His
GTG
[ENA]
¡û
>W141157986
AXNX01000009
Fusobacteriota
Fusobacterium nucleatum CTI-3 [AXNX]
11032
10957
-
His
GTG
[ENA]
¡û
>W141158089
AXNZ01000028
Fusobacteriota
Fusobacterium nucleatum CTI-1 [AXNZ]
66529
66604
+
His
GTG
[ENA]
¡û
>WENV182085786
OHGS01008033
[OHGS] human gut metagenome; feces
1655
1730
+
His
GTG
[ENA]
¢þ
>WENV182487129
OIRU01006250
[OIRU] human gut metagenome; human gut
80
155
+
His
GTG
[ENA]
¢þ
>WENV182864404
OKQC01003691
[OKQC] human gut metagenome; human gut
73
148
+
His
GTG
[ENA]
¢þ
>W141284851
JANA01000020
Fusobacteriota
Fusobacterium sp. OBRC1 [JANA]
7009
6934
-
His
GTG
[ENA]
¡û
>WENV183777717
PPYF01108696
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1418
1493
+
His
GTG
[ENA]
¢þ
>C181058889
CP022124
Fusobacteriota
Fusobacterium animalis ChDC F332 [CP022124]
796536
796611
+
His
GTG
-
¡û
>C181104227
CP024703
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2305 [CP024703]
1136999
1136924
-
His
GTG
-
¡û
>C181104237
CP024704
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2555 [CP024704]
507613
507688
+
His
GTG
-
¡û
>C181104318
CP024705
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2653 [CP024705]
1191102
1191027
-
His
GTG
-
¡û
>C181104862
CP024731
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1262 [CP024731]
1861848
1861773
-
His
GTG
-
¡û
>W09118717
ACDF01000081
Fusobacteriota
Fusobacterium animalis 7_1 [ACDF]
26079
26154
+
His
GTG
[ENA]
¡û
>W09119367
ACDS01000250
Fusobacteriota
Fusobacterium animalis D11 [ACDS]
2938
3013
+
His
GTG
[ENA]
¡û
>W09126651
ACJY01000038
Fusobacteriota
Fusobacterium periodonticum ATCC 33693 [ACJY]
40956
40881
-
His
GTG
[ENA]
¡û
>W1910928992
NIRN01000001
Fusobacteriota
Fusobacterium polymorphum [NIRN]
2228367
2228442
+
His
GTG
[ENA]
¡û
>W1910929128
NIRQ01000001
Fusobacteriota
Fusobacterium polymorphum [NIRQ]
874937
875012
+
His
GTG
[ENA]
¡û
>W1910942357
NJGJ01000001
Fusobacteriota
Fusobacterium animalis [NJGJ]
2371394
2371319
-
His
GTG
[ENA]
¡û
>W1911431710
NXMD01000018
Fusobacteriota
Fusobacterium nucleatum 12230 MIT 2016 [NXMD]
28703
28778
+
His
GTG
[ENA]
¡û
>W1911596347
PNHC01000004
Fusobacteriota
Fusobacterium nucleatum UMB0249 [PNHC]
240125
240050
-
His
GTG
[ENA]
¡û
>W1810084241
PEQW01000001
Fusobacteriota
Fusobacterium polymorphum KCOM 1265 [PEQW]
1922764
1922839
+
His
GTG
[ENA]
¡û
>W1810084312
PEQX01000003
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1321 [PEQX]
60556
60631
+
His
GTG
[ENA]
¡û
>C151016779
CP007062
Fusobacteriota
Fusobacterium animalis 7_1 [CP007062]
165999
166074
+
His
GTG
[Ensembl]
¡û
>C151097735
CP012713
Fusobacteriota
Fusobacterium animalis KCOM 1279 [CP012713]
2464149
2464074
-
His
GTG
-
¡û
>C151097813
CP012715
Fusobacteriota
Fusobacterium animalis KCOM 1325 [CP012715]
2294055
2294130
+
His
GTG
-
¡û
>W10103277
ACQE01000134
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
30892
30967
+
His
GTG
[ENA]
¡û
>W11103433
ACQE01000134
Fusobacteriota
Fusobacterium animalis 3_1_33 [ACQE]
30892
30967
+
His
GTG
[ENA]
¡û
>W11106135
ACUO01000020
Fusobacteriota
Fusobacterium animalis 11_3_2 [ACUO]
100203
100128
-
His
GTG
[ENA]
¡û
>W11115162
ADEE01000001
Fusobacteriota
Fusobacterium animalis 21_1A [ADEE]
60490
60565
+
His
GTG
[ENA]
¡û
>W11171098
AFQD01000003
Fusobacteriota
Fusobacterium animalis subsp. animalis ATCC 51191 [AFQD]
2551
2476
-
His
GTG
[ENA]
¡û
>C161055323
CP013328
Fusobacteriota
Fusobacterium polymorphum ChDC F319 [CP013328]
173602
173527
-
His
GTG
-
¡û
>C161055355
CP013331
Fusobacteriota
Fusobacterium hwasookii ChDC F174 [CP013331]
710581
710656
+
His
GTG
[Ensembl]
¡û
>W121009369
AGEH01000023
Fusobacteriota
Fusobacterium animalis subsp. animalis F0419 [AGEH]
64384
64459
+
His
GTG
[ENA]
¡û
>W121076763
AKBT01000003
Fusobacteriota
Fusobacterium animalis 7_1 [AKBT]
67069
67144
+
His
GTG
[ENA]
¡û
>W121077395
AKCE01000001
Fusobacteriota
Fusobacterium animalis subsp. animalis F0419 [AKCE]
472350
472275
-
His
GTG
[ENA]
¡û
>W121001362
ADDB01000017
Fusobacteriota
Fusobacterium polymorphum subsp. polymorphum F0401 [ADDB]
7785
7710
-
His
GTG
[ENA]
¡û
>W121007430
AGAD01000259
Fusobacteriota
Fusobacterium sp. oral taxon 370 oral taxon 370 str. F0437 [AGAD]
3442
3517
+
His
GTG
[ENA]
¡û
>W121119288
ALVD01000007
Fusobacteriota
Fusobacterium hwasookii ChDC F128 [ALVD]
5129
5054
-
His
GTG
[ENA]
¡û
>C131005510
CP003723
Fusobacteriota
Fusobacterium animalis 4_8 [CP003723]
2087703
2087628
-
His
GTG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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