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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289053 (22 seq.)
>A171000869
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
1015613
1015538
-
Asn
GTT
-
¡û
>A171001025
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1575671
1575596
-
Asn
GTT
-
¡û
>A171001271
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1437153
1437078
-
Asn
GTT
-
¡û
>A171001490
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
1156078
1156003
-
Asn
GTT
-
¡û
>A171004496
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1177046
1176971
-
Asn
GTT
-
¡û
>WENV180275269
OBHT01001306
[OBHT] metagenome; hydrothermal vent
679
604
-
Asn
GTT
[ENA]
¢þ
>WENV180317393
OBKJ01141134
[OBKJ] metagenome; hydrothermal vent
72
-1
-
Asn
GTT
[ENA]
¢þ
>WENV180332790
OBLD01141925
[OBLD] metagenome; water
72
-1
-
Asn
GTT
[ENA]
¢þ
>WENV181212782
OFBU01000081
[OFBU] metagenome; hydrothermal vent
9696
9621
-
Asn
GTT
[ENA]
¢þ
>WENV181213330
OFBV01000505
[OFBV] metagenome; hydrothermal vent
1401
1326
-
Asn
GTT
[ENA]
¢þ
>WENV181213936
OFBW01002990
[OFBW] metagenome; hydrothermal vent
1763
1688
-
Asn
GTT
[ENA]
¢þ
>WENV181214340
OFBX01003442
[OFBX] metagenome; hydrothermal vent
563
488
-
Asn
GTT
[ENA]
¢þ
>WENV181214570
OFBY01002241
[OFBY] metagenome; hydrothermal vent
951
876
-
Asn
GTT
[ENA]
¢þ
>WENV181215053
OFBZ01002118
[OFBZ] metagenome; hydrothermal vent
261
186
-
Asn
GTT
[ENA]
¢þ
>WENV181216187
OFCB01008443
[OFCB] metagenome; hydrothermal vent
506
431
-
Asn
GTT
[ENA]
¢þ
>At0929
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
637667
637742
+
Asn
GTT
[Ensembl]
¡û
>W1610001122
ACQW01000016
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
497
422
-
Asn
GTT
[ENA]
¡û
>W1610001155
ACQY01000017
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
539
464
-
Asn
GTT
[ENA]
¡û
>W1610001544
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
643825
643900
+
Asn
GTT
[ENA]
¡û
>W1610001645
ADCA01000007
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
77622
77697
+
Asn
GTT
[ENA]
¡û
>W1610018098
APMM01000031
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [APMM]
170
245
+
Asn
GTT
[ENA]
¡û
>W1610018646
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
684006
683931
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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