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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289068 (57 seq.)
>W1711228287
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
446198
446123
-
Glu
TTC
[ENA]
¡û
>W1711228288
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
446092
446017
-
Glu
TTC
[ENA]
¡û
>W1711228289
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
445990
445915
-
Glu
TTC
[ENA]
¡û
>W1711228290
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
445892
445817
-
Glu
TTC
[ENA]
¡û
>W131034042
AJGP01000015
Gammaproteobacteria
Isoalcanivorax pacificus W11-5 [AJGP]
70034
69959
-
Glu
TTC
[ENA]
¡û
>WENV181837164
OGVK01004914
[OGVK] freshwater metagenome; freshwater
1989
1914
-
Glu
TTC
[ENA]
¡û
>WENV181852226
OGWF01009878
[OGWF] freshwater metagenome; freshwater
937
1010
+
Glu
TTC
[ENA]
¡û
>WENV170658524
JTFP01132948
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
129
204
+
Glu
TTC
[ENA]
¡û
>C191129106
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2738415
2738340
-
Glu
TTC
-
¡û
>C191129107
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2738313
2738238
-
Glu
TTC
-
¡û
>C191129108
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2738203
2738128
-
Glu
TTC
-
¡û
>C191129109
CP034683
Gammaproteobacteria
Rheinheimera mangrovi LHK132 [CP034683]
2738103
2738028
-
Glu
TTC
-
¡û
>W141779402
JONU01000007
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
621654
621579
-
Glu
TTC
[ENA]
¡û
>W141779403
JONU01000007
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
621554
621479
-
Glu
TTC
[ENA]
¡û
>W141779404
JONU01000007
Gammaproteobacteria
Rheinheimera texasensis DSM 17496 [JONU]
621453
621378
-
Glu
TTC
[ENA]
¡û
>C151006527
CP004387
Gammaproteobacteria
Isoalcanivorax pacificus W11-5 [CP004387]
1464038
1464113
+
Glu
TTC
[Ensembl]
¡û
>W2010071696
AQOR01000005
Gammaproteobacteria
Alcanivorax sp. S71-1-4 [AQOR]
18119
18044
-
Glu
TTC
[ENA]
¡û
>W2011484905
RRCF01000004
Gammaproteobacteria
Pararheinheimera mesophila IITR13 [RRCF]
513266
513341
+
Glu
TTC
[ENA]
¡û
>W2011484906
RRCF01000004
Gammaproteobacteria
Pararheinheimera mesophila IITR13 [RRCF]
513368
513443
+
Glu
TTC
[ENA]
¡û
>W2011484907
RRCF01000004
Gammaproteobacteria
Pararheinheimera mesophila IITR13 [RRCF]
513470
513545
+
Glu
TTC
[ENA]
¡û
>W2011484908
RRCF01000004
Gammaproteobacteria
Pararheinheimera mesophila IITR13 [RRCF]
513580
513655
+
Glu
TTC
[ENA]
¡û
>W2011484909
RRCF01000004
Gammaproteobacteria
Pararheinheimera mesophila IITR13 [RRCF]
513680
513755
+
Glu
TTC
[ENA]
¡û
>W2011484910
RRCF01000004
Gammaproteobacteria
Pararheinheimera mesophila IITR13 [RRCF]
513780
513855
+
Glu
TTC
[ENA]
¡û
>W2011520616
RZUF01000019
Gammaproteobacteria
Rheinheimera sp. YQF-1 [RZUF]
44715
44790
+
Glu
TTC
[ENA]
¡û
>W2011520617
RZUF01000019
Gammaproteobacteria
Rheinheimera sp. YQF-1 [RZUF]
44818
44893
+
Glu
TTC
[ENA]
¡û
>W2011520618
RZUF01000019
Gammaproteobacteria
Rheinheimera sp. YQF-1 [RZUF]
44928
45003
+
Glu
TTC
[ENA]
¡û
>W2011520619
RZUF01000019
Gammaproteobacteria
Rheinheimera sp. YQF-1 [RZUF]
45028
45103
+
Glu
TTC
[ENA]
¡û
>W2011520620
RZUF01000019
Gammaproteobacteria
Rheinheimera sp. YQF-1 [RZUF]
45138
45213
+
Glu
TTC
[ENA]
¡û
>W2011520621
RZUF01000019
Gammaproteobacteria
Rheinheimera sp. YQF-1 [RZUF]
45248
45323
+
Glu
TTC
[ENA]
¡û
>W2011520622
RZUF01000019
Gammaproteobacteria
Rheinheimera sp. YQF-1 [RZUF]
45358
45433
+
Glu
TTC
[ENA]
¡û
>W2011522393
SACS01000008
Gammaproteobacteria
Rheinheimera sp. KYPC3 [SACS]
45426
45501
+
Glu
TTC
[ENA]
¡û
>W2011522394
SACS01000008
Gammaproteobacteria
Rheinheimera sp. KYPC3 [SACS]
45532
45607
+
Glu
TTC
[ENA]
¡û
>W2011522395
SACS01000008
Gammaproteobacteria
Rheinheimera sp. KYPC3 [SACS]
45634
45709
+
Glu
TTC
[ENA]
¡û
>W2011522396
SACS01000008
Gammaproteobacteria
Rheinheimera sp. KYPC3 [SACS]
45732
45807
+
Glu
TTC
[ENA]
¡û
>W2012124455
VRLR01000003
Gammaproteobacteria
Pararheinheimera tangshanensis JA3-B52 [VRLR]
125444
125369
-
Glu
TTC
[ENA]
¡û
>W2012124456
VRLR01000003
Gammaproteobacteria
Pararheinheimera tangshanensis JA3-B52 [VRLR]
125344
125269
-
Glu
TTC
[ENA]
¡û
>W2110030108
BMLH01000003
Gammaproteobacteria
Rheinheimera tangshanensis CGMCC 1.6362 [BMLH]
272943
273018
+
Glu
TTC
[ENA]
¡û
>W2110030109
BMLH01000003
Gammaproteobacteria
Rheinheimera tangshanensis CGMCC 1.6362 [BMLH]
273045
273120
+
Glu
TTC
[ENA]
¡û
>W2110030110
BMLH01000003
Gammaproteobacteria
Rheinheimera tangshanensis CGMCC 1.6362 [BMLH]
273156
273231
+
Glu
TTC
[ENA]
¡û
>W2110030111
BMLH01000003
Gammaproteobacteria
Rheinheimera tangshanensis CGMCC 1.6362 [BMLH]
273256
273331
+
Glu
TTC
[ENA]
¡û
>C231664807
OX352320
Gammaproteobacteria
Rheinheimera sp. MM224 [OX352320]
2779458
2779383
-
Glu
TTC
-
¡û
>C231664808
OX352320
Gammaproteobacteria
Rheinheimera sp. MM224 [OX352320]
2779356
2779281
-
Glu
TTC
-
¡û
>C231664809
OX352320
Gammaproteobacteria
Rheinheimera sp. MM224 [OX352320]
2779246
2779171
-
Glu
TTC
-
¡û
>C231664810
OX352320
Gammaproteobacteria
Rheinheimera sp. MM224 [OX352320]
2779146
2779071
-
Glu
TTC
-
¡û
>W1511573484
LAMX01000020
Gammaproteobacteria
Rheinheimera sp. KL1 [LAMX]
41180
41105
-
Glu
TTC
[ENA]
¡û
>W1511584726
LAVS01000086
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
273888
273963
+
Glu
TTC
[ENA]
¡û
>W1511584727
LAVS01000086
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
273990
274065
+
Glu
TTC
[ENA]
¡û
>W1511584728
LAVS01000086
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
274100
274175
+
Glu
TTC
[ENA]
¡û
>W1511584729
LAVS01000086
Gammaproteobacteria
Rheinheimera mesophila IITR-13 [LAVS]
274200
274275
+
Glu
TTC
[ENA]
¡û
>W11162849
AFHI01000007
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
74148
74073
-
Glu
TTC
[ENA]
¡û
>W11162850
AFHI01000007
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
74046
73971
-
Glu
TTC
[ENA]
¡û
>W11162851
AFHI01000007
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
73936
73861
-
Glu
TTC
[ENA]
¡û
>W11162852
AFHI01000007
Gammaproteobacteria
Rheinheimera sp. A13L [AFHI]
73836
73761
-
Glu
TTC
[ENA]
¡û
>W1611012204
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
446198
446123
-
Glu
TTC
[ENA]
¡û
>W1611012205
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
446092
446017
-
Glu
TTC
[ENA]
¡û
>W1611012206
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
445990
445915
-
Glu
TTC
[ENA]
¡û
>W1611012207
LXWK01000016
Gammaproteobacteria
Rheinheimera sp. SA_1 [LXWK]
445892
445817
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK