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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.28927 (33 seq.)
>C171067986
CP017810
Gammaproteobacteria
Thalassolituus oleivorans K188 [CP017810]
1871260
1871349
+
Ser
GGA
-
¡û
>WENV180296552
OBJA01000859
[OBJA] soil metagenome; sediment, water from around vicinity
4645
4734
+
Ser
GGA
[ENA]
¡û
>WENV180309821
OBJS01049993
[OBJS] beach sand metagenome; beach sand
369
458
+
Ser
GGA
[ENA]
¡û
>WENV182542023
OJAV01000356
[OJAV] seawater metagenome; Sea water
11854
11765
-
Ser
GGA
[ENA]
¡û
>WENV182542391
OJAY01000375
[OJAY] seawater metagenome; Sea water
11854
11765
-
Ser
GGA
[ENA]
¡û
>WENV182542400
OJAY01000454
[OJAY] seawater metagenome; Sea water
5498
5587
+
Ser
GGA
[ENA]
¡û
>WENV182544056
OJBE01000113
[OJBE] seawater metagenome; Sea water
17657
17568
-
Ser
GGA
[ENA]
¡û
>WENV182544069
OJBE01000172
[OJBE] seawater metagenome; Sea water
5478
5567
+
Ser
GGA
[ENA]
¡û
>WENV182546222
OJBO01003031
[OJBO] seawater metagenome; Sea water
1085
1174
+
Ser
GGA
[ENA]
¡û
>WENV182546985
OJBR01000065
[OJBR] seawater metagenome; Sea water
5478
5567
+
Ser
GGA
[ENA]
¡û
>WENV182557520
OJDK01000102
[OJDK] seawater metagenome; Sea water
54124
54035
-
Ser
GGA
[ENA]
¡û
>WENV182559645
OJDQ01000744
[OJDQ] seawater metagenome; Sea water
6332
6243
-
Ser
GGA
[ENA]
¡û
>WENV182562206
OJDZ01000082
[OJDZ] seawater metagenome; Sea water
53715
53626
-
Ser
GGA
[ENA]
¡û
>WENV182563964
OJED01007091
[OJED] seawater metagenome; Sea water
376
465
+
Ser
GGA
[ENA]
¡û
>WENV182575944
OJFX01000644
[OJFX] seawater metagenome; Sea water
7042
7131
+
Ser
GGA
[ENA]
¡û
>WENV183055217
OLGX01000206
[OLGX] seawater metagenome; Sea water
25536
25447
-
Ser
GGA
[ENA]
¡û
>WENV183055251
OLGX01000356
[OLGX] seawater metagenome; Sea water
11844
11755
-
Ser
GGA
[ENA]
¡û
>WENV183059604
OLHV01000054
[OLHV] seawater metagenome; Sea water
64752
64663
-
Ser
GGA
[ENA]
¡û
>WENV183522187
OMOM01000572
[OMOM] seawater metagenome; Sea water
5478
5567
+
Ser
GGA
[ENA]
¡û
>WENV183522222
OMOM01000951
[OMOM] seawater metagenome; Sea water
481
570
+
Ser
GGA
[ENA]
¡û
>WENV170273726
CERL01119076
[CERL] marine metagenome genome assembly TARA_068_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5518
5607
+
Ser
GGA
[ENA]
¡û
>WENV170369943
CETR01049034
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
319
230
-
Ser
GGA
[ENA]
¡û
>WENV170428077
CEUQ01324086
[CEUQ] marine metagenome genome assembly TARA_124_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
524
613
+
Ser
GGA
[ENA]
¡û
>WENV170564938
CZQC01000068
[CZQC] hydrothermal vent metagenome; ocean water
17491
17580
+
Ser
GGA
[ENA]
¡û
>W1910729547
MGYS01000012
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_57_10 [MGYS]
75839
75750
-
Ser
GGA
[ENA]
¡û
>C151013081
CP006829
Gammaproteobacteria
Thalassolituus oleivorans R6-15 [CP006829]
1712636
1712725
+
Ser
GGA
[Ensembl]
¡û
>W2010862977
MGYS01000012
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_57_10 [MGYS]
75839
75750
-
Ser
GGA
[ENA]
¡û
>C211065876
CP046055
Gammaproteobacteria
Oceanospirillaceae bacterium ASO5 [CP046055]
1313794
1313883
+
Ser
GGA
-
¡û
>C211065929
CP046056
Gammaproteobacteria
Oceanospirillaceae bacterium xL5 [CP046056]
1281357
1281446
+
Ser
GGA
-
¡û
>W2110740240
JALE01000020
Gammaproteobacteria
Thalassolituus oleivorans 4BN06-13 [JALE]
5264
5353
+
Ser
GGA
[ENA]
¡û
>C231052619
CP045550
Gammaproteobacteria
Venatorbacter cucullus ASxS5 [CP045550]
1574834
1574745
-
Ser
GGA
-
¡û
>W1511564143
LADM01000016
Gammaproteobacteria
Gammaproteobacteria bacterium BRH_c0 [LADM]
13674
13585
-
Ser
GGA
[ENA]
¡û
>W1710598879
FTOH01000009
Gammaproteobacteria
Thalassolituus maritimus marinus [FTOH]
169631
169720
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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