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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289282 (25 seq.)
>W1711078568
LSMZ01000076
Bacillota
Clostridium sp. link-BC1 [LSMZ]
32777
32702
-
Pro
TGG
[ENA]
¡û
>W1711222545
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
2983592
2983517
-
Pro
TGG
[ENA]
¡û
>C007143
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
2598424
2598349
-
Pro
TGG
[Ensembl]
¡û
>W141088602
AUVG01000081
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
50385
50459
+
Pro
TGG
[ENA]
¡û
>WENV170002941
AGTN01174659
[AGTN] bioreactor metagenome; poplar biomass
288
213
-
Pro
TGG
[ENA]
¢þ
>WENV170564067
CZCB01045941
[CZCB] anaerobic digester metagenome; anaerobic digester
770
695
-
Pro
TGG
[ENA]
¢þ
>WENV170564069
CZCB01046010
[CZCB] anaerobic digester metagenome; anaerobic digester
185
110
-
Pro
TGG
[ENA]
¢þ
>WENV170691238
LFRM01388157
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
15642
15717
+
Pro
TGG
[ENA]
¢þ
>C181054373
CP021850
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5807 [CP021850]
4386452
4386377
-
Pro
TGG
-
¡û
>W09100442
AABG04000006
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
94811
94886
+
Pro
TGG
[ENA]
¡û
>W143001731
AUVG01000110
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
18644
18569
-
Pro
TGG
[ENA]
¡û
>W1910884626
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
332209
332134
-
Pro
TGG
[ENA]
¡û
>W1910927519
NIOI01000002
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5809 [NIOI]
342565
342640
+
Pro
TGG
[ENA]
¡û
>W1910927549
NIOJ01000006
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5806 [NIOJ]
91745
91820
+
Pro
TGG
[ENA]
¡û
>W1910927606
NIOK01000006
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5808 [NIOK]
81091
81166
+
Pro
TGG
[ENA]
¡û
>W1911572329
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
3332789
3332714
-
Pro
TGG
[ENA]
¡û
>C11106481
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
3339553
3339478
-
Pro
TGG
[Ensembl]
¡û
>C161076010
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
106380
106455
+
Pro
TGG
[Ensembl]
¡û
>C161076059
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
109516
109591
+
Pro
TGG
[Ensembl]
¡û
>W1610043726
BAZZ01000011
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
116917
116992
+
Pro
TGG
[ENA]
¡û
>C131011027
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
107072
107147
+
Pro
TGG
-
¡û
>C131011893
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
106954
107029
+
Pro
TGG
-
¡û
>W1610605349
LFRV01000120
Bacillota
Clostridiales bacterium DTU069 [LFRV]
15642
15717
+
Pro
TGG
[ENA]
¡û
>W1710040886
BAZZ01000011
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
116917
116992
+
Pro
TGG
[ENA]
¡û
>W1710726669
LFRV01000120
Bacillota
Clostridiales bacterium DTU069 [LFRV]
15642
15717
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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