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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289357 (109 seq.)
>W1710811788
LKIU01000005
Actinomycetota
Arthrobacter sp. Edens01 [LKIU]
858998
859071
+
Glu
CTC
[ENA]
¡û
>W1710876830
LMPO01000010
Actinomycetota
Curtobacterium sp. Leaf183 [LMPO]
164082
164007
-
Glu
CTC
[ENA]
¡û
>W1711270775
LZEM01000021
Actinomycetota
Microbacterium arborescens [LZEM]
457517
457442
-
Glu
CTC
[ENA]
¡û
>W1711343387
MCIG01000034
Actinomycetota
Curtobacterium sp. UCD-KPL2560 [MCIG]
920
995
+
Glu
CTC
[ENA]
¡û
>W1711343388
MCIG01000034
Actinomycetota
Curtobacterium sp. UCD-KPL2560 [MCIG]
1050
1125
+
Glu
CTC
[ENA]
¡û
>W1711385606
MEEJ01000011
Actinomycetota
Microbacterium sp. SCN 70-200 [MEEJ]
159345
159420
+
Glu
CTC
[ENA]
¡û
>W1711455971
MJAK01000001
Actinomycetota
Curtobacterium sp. ER1/6 [MJAK]
19228
19303
+
Glu
CTC
[ENA]
¡û
>W1711455972
MJAK01000001
Actinomycetota
Curtobacterium sp. ER1/6 [MJAK]
19358
19431
+
Glu
CTC
[ENA]
¡û
>W1711460911
MJGI01000025
Actinomycetota
Curtobacterium sp. MCBA15_001 [MJGI]
23160
23235
+
Glu
CTC
[ENA]
¡û
>W1711461312
MJGR01000034
Actinomycetota
Curtobacterium sp. MCBA15_016 [MJGR]
31717
31792
+
Glu
CTC
[ENA]
¡û
>W1711461313
MJGR01000034
Actinomycetota
Curtobacterium sp. MCBA15_016 [MJGR]
31864
31937
+
Glu
CTC
[ENA]
¡û
>W1711463316
MJIR01000052
Actinomycetota
Microbacterium sp. AR7-10 [MJIR]
3207
3134
-
Glu
CTC
[ENA]
¡û
>W1711463317
MJIR01000052
Actinomycetota
Microbacterium sp. AR7-10 [MJIR]
1932
1857
-
Glu
CTC
[ENA]
¡û
>W1711503463
MKTQ01000014
Actinomycetota
Microbacterium sp. 70-16 [MKTQ]
159572
159647
+
Glu
CTC
[ENA]
¡û
>C171063836
CP017580
Actinomycetota
Curtobacterium sp. BH-2-1-1 [CP017580]
349280
349205
-
Glu
CTC
-
¡û
>C171063837
CP017580
Actinomycetota
Curtobacterium sp. BH-2-1-1 [CP017580]
349133
349060
-
Glu
CTC
-
¡û
>C171073413
CP018135
Actinomycetota
Neomicrococcus aestuarii B18 [CP018135]
342857
342930
+
Glu
CTC
-
¡û
>C171083632
CP018783
Actinomycetota
Curtobacterium pusillum AA3 [CP018783]
871346
871271
-
Glu
CTC
-
¡û
>C171083633
CP018783
Actinomycetota
Curtobacterium pusillum AA3 [CP018783]
871197
871124
-
Glu
CTC
-
¡û
>W131099057
AOSQ01000020
Actinomycetota
Kocuria sp. UCD-OTCP [AOSQ]
48744
48669
-
Glu
CTC
[ENA]
¡û
>W131099058
AOSQ01000020
Actinomycetota
Kocuria sp. UCD-OTCP [AOSQ]
48517
48442
-
Glu
CTC
[ENA]
¡û
>W131162189
AQYI01000007
Actinomycetota
Microbacterium paraoxydans 77MFTsu3.2 [AQYI]
117789
117714
-
Glu
CTC
[ENA]
¡û
>W131218532
ATXU01000012
Actinomycetota
Leucobacter chironomi DSM 19883 [ATXU]
19741
19666
-
Glu
CTC
[ENA]
¡û
>w013983
AAOB01000013
Actinomycetota
marine actinobacterium PHSC20C1 [AAOB]
39421
39346
-
Glu
CTC
[ENA]
¡û
>WENV180394154
OBPR01080560
[OBPR] marine metagenome; ENVO:00002042
228
155
-
Glu
CTC
[ENA]
¢þ
>WENV181166515
OEIU01000476
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
36159
36084
-
Glu
CTC
[ENA]
¢þ
>W141187489
AYME01000003
Actinomycetota
Microbacterium paraoxydans DH1b [AYME]
435673
435746
+
Glu
CTC
[ENA]
¡û
>W141203183
AZHY01000175
Actinomycetota
Arthrobacter sp. 35/47 [AZHY]
10011
9936
-
Glu
CTC
[ENA]
¡û
>W141223011
BACW01000508
Actinomycetota
Curtobacterium sp. B8 [BACW]
2047
1972
-
Glu
CTC
[ENA]
¡û
>W141223012
BACW01000508
Actinomycetota
Curtobacterium sp. B8 [BACW]
1914
1839
-
Glu
CTC
[ENA]
¡û
>W141223129
BACZ01000258
Actinomycetota
Curtobacterium sp. B18 [BACZ]
4948
5023
+
Glu
CTC
[ENA]
¡û
>W141223130
BACZ01000258
Actinomycetota
Curtobacterium sp. B18 [BACZ]
5095
5168
+
Glu
CTC
[ENA]
¡û
>WENV183726062
PJQF01073361
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
194
269
+
Glu
CTC
[ENA]
¢þ
>WENV183735094
PJUA01000886
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
115
190
+
Glu
CTC
[ENA]
¢þ
>WENV183735240
PJUA01005139
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
77
2
-
Glu
CTC
[ENA]
¢þ
>WENV170011393
APMI01062722
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
3912
3839
-
Glu
CTC
[ENA]
¢þ
>WENV170713354
LNFM01029232
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2133
2208
+
Glu
CTC
[ENA]
¢þ
>WENV170920761
MDTG01002410
[MDTG] marine metagenome; seawater
5904
5829
-
Glu
CTC
[ENA]
¢þ
>WENV170925157
MDTG01079046
[MDTG] marine metagenome; seawater
3344
3419
+
Glu
CTC
[ENA]
¢þ
>W141484306
JFYO01000001
Actinomycetota
Microbacterium oleivorans [JFYO]
538585
538510
-
Glu
CTC
[ENA]
¡û
>C191056001
CP027869
Actinomycetota
Curtobacterium sp. SGAir0471 [CP027869]
2174461
2174386
-
Glu
CTC
-
¡û
>C191056002
CP027869
Actinomycetota
Curtobacterium sp. SGAir0471 [CP027869]
2174328
2174253
-
Glu
CTC
-
¡û
>C191056069
CP027942
Actinomycetota
Agrococcus sp. SGAir0287 [CP027942]
953514
953589
+
Glu
CTC
-
¡û
>C191139346
CP035375
Actinomycetota
Salinibacterium sp. UTAS2018 [CP035375]
1111410
1111337
-
Glu
CTC
-
¡û
>W141739351
JNNT01000110
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
2876
2951
+
Glu
CTC
[ENA]
¡û
>W141739400
JNNT01003696
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
426
501
+
Glu
CTC
[ENA]
¡û
>W1910231937
FPEG01000003
Actinomycetota
Agrococcus sp. Marseille-P2731 [FPEG]
96944
96869
-
Glu
CTC
[ENA]
¡û
>C09107746
CP001628
Actinomycetota
Micrococcus luteus NCTC 2665 [CP001628]
936195
936270
+
Glu
CTC
[Ensembl]
¡û
>W1911075312
NMUN01000004
Actinomycetota
Microbacterium sp. BR1 [NMUN]
196840
196913
+
Glu
CTC
[ENA]
¡û
>W1911426078
NXIA01000029
Actinomycetota
Curtobacterium sp. 'Ferrero' [NXIA]
28346
28421
+
Glu
CTC
[ENA]
¡û
>W1911426079
NXIA01000029
Actinomycetota
Curtobacterium sp. 'Ferrero' [NXIA]
28475
28550
+
Glu
CTC
[ENA]
¡û
>W1911496185
OCMI01000001
Actinomycetota
Curtobacterium sp. 314Chir4.1 [OCMI]
29950
30025
+
Glu
CTC
[ENA]
¡û
>W1911496186
OCMI01000001
Actinomycetota
Curtobacterium sp. 314Chir4.1 [OCMI]
30099
30172
+
Glu
CTC
[ENA]
¡û
>W1911681921
QKLA01000020
Actinomycetota
Curtobacterium sp. MCPF17_050 [QKLA]
45166
45091
-
Glu
CTC
[ENA]
¡û
>W1911681968
QKLB01000014
Actinomycetota
Curtobacterium sp. MCPF17_046 [QKLB]
78851
78776
-
Glu
CTC
[ENA]
¡û
>W1911682062
QKLD01000013
Actinomycetota
Curtobacterium sp. MCPF17_015 [QKLD]
4896
4971
+
Glu
CTC
[ENA]
¡û
>W1911682065
QKLI01000001
Actinomycetota
Curtobacterium sp. MCBD17_030 [QKLI]
9937
10012
+
Glu
CTC
[ENA]
¡û
>W1911682146
QKLJ01000010
Actinomycetota
Curtobacterium sp. MCBD17_023 [QKLJ]
78612
78537
-
Glu
CTC
[ENA]
¡û
>W1911682178
QKLK01000004
Actinomycetota
Curtobacterium sp. MCBD17_029 [QKLK]
402440
402365
-
Glu
CTC
[ENA]
¡û
>W1911685028
QKSD01000007
Actinomycetota
Curtobacterium sp. MCPF17_052 [QKSD]
10003
10078
+
Glu
CTC
[ENA]
¡û
>W1911685140
QKSF01000017
Actinomycetota
Curtobacterium sp. MCPF17_047 [QKSF]
9699
9774
+
Glu
CTC
[ENA]
¡û
>W1911685153
QKSG01000001
Actinomycetota
Curtobacterium sp. MCPF17_031 [QKSG]
630228
630153
-
Glu
CTC
[ENA]
¡û
>W1911685339
QKSK01000002
Actinomycetota
Curtobacterium sp. MCPF17_011 [QKSK]
337232
337157
-
Glu
CTC
[ENA]
¡û
>W1911685414
QKSL01000018
Actinomycetota
Curtobacterium sp. MCPF17_001 [QKSL]
49495
49420
-
Glu
CTC
[ENA]
¡û
>W1911685464
QKTK01000021
Actinomycetota
Curtobacterium sp. MCBD17_008 [QKTK]
44420
44345
-
Glu
CTC
[ENA]
¡û
>W1911685673
QKTO01000015
Actinomycetota
Curtobacterium sp. MCBD17_032 [QKTO]
62883
62808
-
Glu
CTC
[ENA]
¡û
>W1911685851
QKTS01000016
Actinomycetota
Curtobacterium sp. MCBD17_021 [QKTS]
4877
4952
+
Glu
CTC
[ENA]
¡û
>W1810402853
PYHR01000002
Actinomycetota
Serinibacter arcticus PCH200 [PYHR]
39079
39152
+
Glu
CTC
[ENA]
¡û
>W1810538337
QDFT01000007
Actinomycetota
Microbacterium testaceum TPD7010 [QDFT]
24220
24145
-
Glu
CTC
[ENA]
¡û
>W1810675517
QKLF01000003
Actinomycetota
Curtobacterium sp. MCJR17_055 [QKLF]
4896
4971
+
Glu
CTC
[ENA]
¡û
>W1810675588
QKLG01000009
Actinomycetota
Curtobacterium sp. MCJR17_043 [QKLG]
4896
4971
+
Glu
CTC
[ENA]
¡û
>W1810680966
QKSM01000015
Actinomycetota
Curtobacterium sp. MCSS17_008 [QKSM]
17275
17350
+
Glu
CTC
[ENA]
¡û
>W1810680967
QKSM01000015
Actinomycetota
Curtobacterium sp. MCSS17_008 [QKSM]
17409
17484
+
Glu
CTC
[ENA]
¡û
>W1810680980
QKSN01000001
Actinomycetota
Curtobacterium sp. MCSS17_007 [QKSN]
900804
900729
-
Glu
CTC
[ENA]
¡û
>W1810680981
QKSN01000001
Actinomycetota
Curtobacterium sp. MCSS17_007 [QKSN]
900670
900595
-
Glu
CTC
[ENA]
¡û
>W1810681213
QKSR01000005
Actinomycetota
Curtobacterium sp. MCSS17_015 [QKSR]
282736
282661
-
Glu
CTC
[ENA]
¡û
>W1810681322
QKST01000026
Actinomycetota
Curtobacterium sp. MCLR17_007 [QKST]
22181
22256
+
Glu
CTC
[ENA]
¡û
>W1810682006
QKTI01000011
Actinomycetota
Curtobacterium sp. MCLR17_032 [QKTI]
108020
107945
-
Glu
CTC
[ENA]
¡û
>W1810762702
QQAO01000004
Actinomycetota
Curtobacterium sp. AG1037 [QQAO]
372068
371993
-
Glu
CTC
[ENA]
¡û
>W1810762703
QQAO01000004
Actinomycetota
Curtobacterium sp. AG1037 [QQAO]
371925
371852
-
Glu
CTC
[ENA]
¡û
>SRA1045427
SRR035093.92074
454 Sequencing (SRP001814)
369
444
+
Glu
CTC
[SRA]
>W1510018495
BBUD01000171
Actinomycetota
Arthrobacter sp. Hiyo1 [BBUD]
1228
1303
+
Glu
CTC
[ENA]
¡û
>W1510063992
CDAR01000011
Actinomycetota
Microbacterium gorillae G3 [CDAR]
311060
311135
+
Glu
CTC
[ENA]
¡û
>W1510089389
CECE01000005
Actinomycetota
Arthrobacter koreensis 5J12A [CECE]
5783
5858
+
Glu
CTC
[ENA]
¡û
>W1511528975
JYJA01000031
Actinomycetota
Microbacterium trichothecenolyticum DSM 8608 [JYJA]
83869
83794
-
Glu
CTC
[ENA]
¡û
>W1511528976
JYJA01000031
Actinomycetota
Microbacterium trichothecenolyticum DSM 8608 [JYJA]
83751
83676
-
Glu
CTC
[ENA]
¡û
>C161021929
CP009755
Actinomycetota
Curtobacterium sp. MR_MD2014 [CP009755]
2143226
2143151
-
Glu
CTC
[Ensembl]
¡û
>C161021930
CP009755
Actinomycetota
Curtobacterium sp. MR_MD2014 [CP009755]
2143092
2143017
-
Glu
CTC
[Ensembl]
¡û
>W1610068326
BCRG01000002
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
68887
68962
+
Glu
CTC
[ENA]
¡û
>W121043559
AHWA01000004
Actinomycetota
Salinibacterium sp. PAMC 21357 [AHWA]
158136
158063
-
Glu
CTC
[ENA]
¡û
>W1610588245
LDQB01000176
Actinomycetota
Curtobacterium citreum [LDQB]
842
917
+
Glu
CTC
[ENA]
¡û
>W1610588246
LDQB01000176
Actinomycetota
Curtobacterium citreum [LDQB]
985
1058
+
Glu
CTC
[ENA]
¡û
>W1610589984
LDRB01000017
Actinomycetota
Curtobacterium oceanosedimentum [LDRB]
6114
6189
+
Glu
CTC
[ENA]
¡û
>W1610589985
LDRB01000017
Actinomycetota
Curtobacterium oceanosedimentum [LDRB]
6248
6323
+
Glu
CTC
[ENA]
¡û
>W1610590017
LDRC01000009
Actinomycetota
Curtobacterium oceanosedimentum [LDRC]
41788
41713
-
Glu
CTC
[ENA]
¡û
>W1610590018
LDRC01000009
Actinomycetota
Curtobacterium oceanosedimentum [LDRC]
41655
41580
-
Glu
CTC
[ENA]
¡û
>W1610675885
LKIU01000005
Actinomycetota
Arthrobacter sp. Edens01 [LKIU]
858998
859071
+
Glu
CTC
[ENA]
¡û
>W1610739176
LMPO01000010
Actinomycetota
Curtobacterium sp. Leaf183 [LMPO]
164082
164007
-
Glu
CTC
[ENA]
¡û
>W1611030339
LZEM01000021
Actinomycetota
Microbacterium arborescens [LZEM]
457517
457442
-
Glu
CTC
[ENA]
¡û
>W1710065699
BCRG01000002
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
68887
68962
+
Glu
CTC
[ENA]
¡û
>W1710526373
FNKG01000003
Actinomycetota
Curtobacterium sp. UNCCL20 [FNKG]
29927
30002
+
Glu
CTC
[ENA]
¡û
>W1710561419
FOOD01000004
Actinomycetota
Curtobacterium sp. YR515 [FOOD]
27039
27114
+
Glu
CTC
[ENA]
¡û
>W1710561420
FOOD01000004
Actinomycetota
Curtobacterium sp. YR515 [FOOD]
27186
27259
+
Glu
CTC
[ENA]
¡û
>W1710707525
LDQB01000176
Actinomycetota
Curtobacterium citreum [LDQB]
842
917
+
Glu
CTC
[ENA]
¡û
>W1710707526
LDQB01000176
Actinomycetota
Curtobacterium citreum [LDQB]
985
1058
+
Glu
CTC
[ENA]
¡û
>W1710709264
LDRB01000017
Actinomycetota
Curtobacterium oceanosedimentum [LDRB]
6114
6189
+
Glu
CTC
[ENA]
¡û
>W1710709265
LDRB01000017
Actinomycetota
Curtobacterium oceanosedimentum [LDRB]
6248
6323
+
Glu
CTC
[ENA]
¡û
>W1710709297
LDRC01000009
Actinomycetota
Curtobacterium oceanosedimentum [LDRC]
41788
41713
-
Glu
CTC
[ENA]
¡û
>W1710709298
LDRC01000009
Actinomycetota
Curtobacterium oceanosedimentum [LDRC]
41655
41580
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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