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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289383 (39 seq.)
>WENV180011833
FLSK01056754
[FLSK] metagenome; saliva
196
120
-
Pro
TGG
[ENA]
¢þ
>WENV180806253
ODJH01006430
[ODJH] human metagenome; G_DNA_Tongue dorsum
1795
1871
+
Pro
TGG
[ENA]
¢þ
>WENV180931351
ODTP01003146
[ODTP] human metagenome; G_DNA_Tongue dorsum
517
593
+
Pro
TGG
[ENA]
¢þ
>WENV180979259
ODVC01000053
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
54531
54607
+
Pro
TGG
[ENA]
¢þ
>WENV180979407
ODVC01000149
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
42367
42291
-
Pro
TGG
[ENA]
¢þ
>WENV180991618
ODVO01000101
[ODVO] human metagenome; G_DNA_Buccal mucosa
11135
11059
-
Pro
TGG
[ENA]
¢þ
>WENV180991701
ODVO01000475
[ODVO] human metagenome; G_DNA_Buccal mucosa
12053
11977
-
Pro
TGG
[ENA]
¢þ
>WENV181428137
OGCU01002434
[OGCU] metagenome; Human gut stool
5022
4946
-
Pro
TGG
[ENA]
¢þ
>WENV181557607
OGIV01051597
[OGIV] metagenome; Human gut stool
139
63
-
Pro
TGG
[ENA]
¢þ
>WENV181561583
OGJD01019570
[OGJD] metagenome; Human gut stool
414
490
+
Pro
TGG
[ENA]
¢þ
>WENV181580335
OGJZ01037589
[OGJZ] metagenome; Human gut stool
142
66
-
Pro
TGG
[ENA]
¢þ
>WENV181623718
OGMJ01000019
[OGMJ] metagenome; Human gut stool
122571
122647
+
Pro
TGG
[ENA]
¢þ
>WENV181868088
OGWW01018585
[OGWW] human gut metagenome; faeces
139
63
-
Pro
TGG
[ENA]
¢þ
>WENV181869737
OGWY01000608
[OGWY] human gut metagenome; faeces
24594
24518
-
Pro
TGG
[ENA]
¢þ
>WENV181878406
OGXE01003073
[OGXE] human gut metagenome; faeces
88
12
-
Pro
TGG
[ENA]
¢þ
>WENV181891697
OGXO01071041
[OGXO] human gut metagenome; faeces
296
220
-
Pro
TGG
[ENA]
¢þ
>WENV181892762
OGXP01006328
[OGXP] human gut metagenome; faeces
133
57
-
Pro
TGG
[ENA]
¢þ
>WENV181899795
OGXU01038558
[OGXU] human gut metagenome; faeces
528
604
+
Pro
TGG
[ENA]
¢þ
>WENV181958836
OGZM01000623
[OGZM] human gut metagenome; faeces
29360
29284
-
Pro
TGG
[ENA]
¢þ
>WENV182015774
OHBR01026555
[OHBR] human gut metagenome; feces
598
522
-
Pro
TGG
[ENA]
¢þ
>WENV183571639
OOCE01021580
[OOCE] human gut metagenome; human gut
1091
1015
-
Pro
TGG
[ENA]
¢þ
>C181103991
CP024698
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1283 [CP024698]
984665
984589
-
Pro
TGG
-
¡û
>C181104127
CP024701
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1277 [CP024701]
2052508
2052432
-
Pro
TGG
-
¡û
>C181104297
CP024705
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 2653 [CP024705]
1380152
1380228
+
Pro
TGG
-
¡û
>C191219256
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
1397584
1397660
+
Pro
TGG
-
¡û
>C191219279
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
3067336
3067260
-
Pro
TGG
-
¡û
>W1910212524
FMJA01000003
Fusobacteriota
Fusobacterium massiliense Marseille-P2749 [FMJA]
186416
186492
+
Pro
TGG
[ENA]
¡û
>W1910212561
FMJA01000006
Fusobacteriota
Fusobacterium massiliense Marseille-P2749 [FMJA]
209171
209095
-
Pro
TGG
[ENA]
¡û
>W1810084291
PEQX01000001
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1321 [PEQX]
943528
943452
-
Pro
TGG
[ENA]
¡û
>W1810084338
PEQY01000001
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1259 [PEQY]
756155
756231
+
Pro
TGG
[ENA]
¡û
>W1511347885
JRJZ01000054
Fusobacteriota
Cetobacterium sp. ZWU0022 [JRJZ]
142
66
-
Pro
TGG
[ENA]
¡û
>W1511347893
JRJZ01000132
Fusobacteriota
Cetobacterium sp. ZWU0022 [JRJZ]
351
275
-
Pro
TGG
[ENA]
¡û
>W1511403689
JTLI01000049
Fusobacteriota
Cetobacterium sp. ZOR0034 [JTLI]
75
1
-
Pro
TGG
[ENA]
¡û
>W1511403690
JTLI01000053
Fusobacteriota
Cetobacterium sp. ZOR0034 [JTLI]
10279
10355
+
Pro
TGG
[ENA]
¡û
>W1511403695
JTLI01000070
Fusobacteriota
Cetobacterium sp. ZOR0034 [JTLI]
4861
4937
+
Pro
TGG
[ENA]
¡û
>W1710600941
FUWX01000006
Fusobacteriota
Cetobacterium ceti [FUWX]
178727
178803
+
Pro
TGG
[ENA]
¡û
>W1710600952
FUWX01000006
Fusobacteriota
Cetobacterium ceti [FUWX]
17659
17583
-
Pro
TGG
[ENA]
¡û
>W1710600984
FUWX01000015
Fusobacteriota
Cetobacterium ceti [FUWX]
54002
54078
+
Pro
TGG
[ENA]
¡û
>W1710601014
FUWX01000045
Fusobacteriota
Cetobacterium ceti [FUWX]
413
337
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK