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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289397 (106 seq.)
>W1711009081
LQQL01000682
Bacillota
Weissella sp. DD23 [LQQL]
264
190
-
Phe
GAA
[ENA]
¡û
>W1711168446
LVYB01000002
Bacillota
Weissella cibaria [LVYB]
100111
100185
+
Phe
GAA
[ENA]
¡û
>W1711168497
LVYB01000033
Bacillota
Weissella cibaria [LVYB]
17037
16963
-
Phe
GAA
[ENA]
¡û
>W1711572569
MNBZ01000002
Bacillota
Weissella confusa [MNBZ]
75170
75244
+
Phe
GAA
[ENA]
¡û
>W1711572592
MNBZ01000007
Bacillota
Weissella confusa [MNBZ]
1724
1798
+
Phe
GAA
[ENA]
¡û
>W1711999879
NDXJ01000008
Bacillota
Weissella cibaria [NDXJ]
99440
99366
-
Phe
GAA
[ENA]
¡û
>W1711999896
NDXJ01000009
Bacillota
Weissella cibaria [NDXJ]
1557
1631
+
Phe
GAA
[ENA]
¡û
>C171026217
CP013726
Bacillota
Weissella cibaria CMS2 [CP013726]
1172663
1172737
+
Phe
GAA
-
¡û
>C171026269
CP013726
Bacillota
Weissella cibaria CMS2 [CP013726]
265988
265914
-
Phe
GAA
-
¡û
>C171029795
CP013934
Bacillota
Weissella cibaria CMS3 [CP013934]
712021
712095
+
Phe
GAA
-
¡û
>C171029827
CP013934
Bacillota
Weissella cibaria CMS3 [CP013934]
2148256
2148182
-
Phe
GAA
-
¡û
>C171029881
CP013936
Bacillota
Weissella cibaria CMU [CP013936]
722505
722579
+
Phe
GAA
-
¡û
>C171029913
CP013936
Bacillota
Weissella cibaria CMU [CP013936]
2158738
2158664
-
Phe
GAA
-
¡û
>W141240369
CAGH01000007
Bacillota
Weissella confusa LBAE C39-2 [CAGH]
1331
1405
+
Phe
GAA
[ENA]
¡û
>W141240399
CAGH01000038
Bacillota
Weissella confusa LBAE C39-2 [CAGH]
11301
11227
-
Phe
GAA
[ENA]
¡û
>C181047631
CP020928
Bacillota
Weissella cibaria M2 [CP020928]
213315
213389
+
Phe
GAA
-
¡û
>C181047685
CP020928
Bacillota
Weissella cibaria M2 [CP020928]
1858039
1857965
-
Phe
GAA
-
¡û
>C181069748
CP022606
Bacillota
Weissella cibaria CMS1 [CP022606]
1923734
1923808
+
Phe
GAA
-
¡û
>C181069785
CP022606
Bacillota
Weissella cibaria CMS1 [CP022606]
1017069
1016995
-
Phe
GAA
-
¡û
>C181143158
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
986889
986963
+
Phe
GAA
-
¡û
>C181143177
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
1251683
1251757
+
Phe
GAA
-
¡û
>C181152868
CP027427
Bacillota
Weissella cibaria BM2 [CP027427]
2317560
2317634
+
Phe
GAA
-
¡û
>C181152889
CP027427
Bacillota
Weissella cibaria BM2 [CP027427]
1417796
1417722
-
Phe
GAA
-
¡û
>C191013636
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1451699
1451625
-
Phe
GAA
-
¡û
>C191013656
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1220525
1220451
-
Phe
GAA
-
¡û
>C191051627
CP027563
Bacillota
Weissella confusa VTT E-133279 [CP027563]
619833
619907
+
Phe
GAA
-
¡û
>C191051658
CP027563
Bacillota
Weissella confusa VTT E-133279 [CP027563]
2044569
2044495
-
Phe
GAA
-
¡û
>C191051712
CP027565
Bacillota
Weissella confusa VTT E-90392 [CP027565]
599489
599563
+
Phe
GAA
-
¡û
>C191051743
CP027565
Bacillota
Weissella confusa VTT E-90392 [CP027565]
2184193
2184119
-
Phe
GAA
-
¡û
>C191137843
CP035267
Bacillota
Weissella cibaria SRCM103448 [CP035267]
214536
214610
+
Phe
GAA
-
¡û
>C191137897
CP035267
Bacillota
Weissella cibaria SRCM103448 [CP035267]
1713620
1713546
-
Phe
GAA
-
¡û
>C191188449
CP041193
Bacillota
Weissella cibaria CBA3612 [CP041193]
1672589
1672663
+
Phe
GAA
-
¡û
>C191188495
CP041193
Bacillota
Weissella cibaria CBA3612 [CP041193]
773778
773704
-
Phe
GAA
-
¡û
>W1910178077
BJEF01000004
Bacillota
Weissella cibaria JCM 12495 [BJEF]
1502
1576
+
Phe
GAA
[ENA]
¡û
>W1910401443
FUWE01000018
Bacillota
Weissella confusa AB3E41 [FUWE]
1161
1235
+
Phe
GAA
[ENA]
¡û
>W1910638422
LRRC01000012
Bacillota
Weissella cibaria 110 [LRRC]
1374
1448
+
Phe
GAA
[ENA]
¡û
>W1910638455
LRRC01000016
Bacillota
Weissella cibaria 110 [LRRC]
103341
103415
+
Phe
GAA
[ENA]
¡û
>W1911634691
PVRY01000009
Bacillota
Weissella confusa CCUG 61560 [PVRY]
1544
1618
+
Phe
GAA
[ENA]
¡û
>W1911634733
PVRY01000023
Bacillota
Weissella confusa CCUG 61560 [PVRY]
174106
174032
-
Phe
GAA
[ENA]
¡û
>W1911634769
PVRZ01000007
Bacillota
Weissella confusa CCUG 51220 [PVRZ]
1462
1536
+
Phe
GAA
[ENA]
¡û
>W1911634808
PVRZ01000028
Bacillota
Weissella confusa CCUG 51220 [PVRZ]
195300
195226
-
Phe
GAA
[ENA]
¡û
>W1911634846
PVSA01000007
Bacillota
Weissella confusa CCUG 39518 [PVSA]
1422
1496
+
Phe
GAA
[ENA]
¡û
>W1911634887
PVSA01000026
Bacillota
Weissella confusa CCUG 39518 [PVSA]
26158
26084
-
Phe
GAA
[ENA]
¡û
>W1911634922
PVSB01000013
Bacillota
Weissella confusa CCUG 37938 [PVSB]
1544
1618
+
Phe
GAA
[ENA]
¡û
>W1911634964
PVSB01000028
Bacillota
Weissella confusa CCUG 37938 [PVSB]
174225
174151
-
Phe
GAA
[ENA]
¡û
>W1911634998
PVSC01000004
Bacillota
Weissella confusa CCUG 36556 [PVSC]
1462
1536
+
Phe
GAA
[ENA]
¡û
>W1911635038
PVSC01000016
Bacillota
Weissella confusa CCUG 36556 [PVSC]
236845
236771
-
Phe
GAA
[ENA]
¡û
>W1911635101
PVSD01000021
Bacillota
Weissella confusa CCUG 30969 [PVSD]
159846
159772
-
Phe
GAA
[ENA]
¡û
>W1911635120
PVSD01000027
Bacillota
Weissella confusa CCUG 30969 [PVSD]
595
521
-
Phe
GAA
[ENA]
¡û
>W1911635155
PVSE01000008
Bacillota
Weissella confusa F71 [PVSE]
1462
1536
+
Phe
GAA
[ENA]
¡û
>W1911635195
PVSE01000027
Bacillota
Weissella confusa F71 [PVSE]
22776
22702
-
Phe
GAA
[ENA]
¡û
>W1911635229
PVSF01000005
Bacillota
Weissella confusa EJ61 [PVSF]
1462
1536
+
Phe
GAA
[ENA]
¡û
>W1911635270
PVSF01000019
Bacillota
Weissella confusa EJ61 [PVSF]
195799
195725
-
Phe
GAA
[ENA]
¡û
>W1911635311
PVSG01000008
Bacillota
Weissella confusa EJ52 [PVSG]
1462
1536
+
Phe
GAA
[ENA]
¡û
>W1911635351
PVSG01000025
Bacillota
Weissella confusa EJ52 [PVSG]
22776
22702
-
Phe
GAA
[ENA]
¡û
>W1911635389
PVSH01000011
Bacillota
Weissella confusa EJ12 [PVSH]
1422
1496
+
Phe
GAA
[ENA]
¡û
>W1911635429
PVSH01000030
Bacillota
Weissella confusa EJ12 [PVSH]
23150
23076
-
Phe
GAA
[ENA]
¡û
>W1911635464
PVSI01000014
Bacillota
Weissella confusa VTT E-163496 [PVSI]
1462
1536
+
Phe
GAA
[ENA]
¡û
>W1911635506
PVSI01000042
Bacillota
Weissella confusa VTT E-163496 [PVSI]
83748
83674
-
Phe
GAA
[ENA]
¡û
>W1911635544
PVSJ01000002
Bacillota
Weissella confusa VTT E-153460 [PVSJ]
1462
1536
+
Phe
GAA
[ENA]
¡û
>W1911635585
PVSJ01000010
Bacillota
Weissella confusa VTT E-153460 [PVSJ]
232688
232614
-
Phe
GAA
[ENA]
¡û
>W1911635646
PVSK01000027
Bacillota
Weissella confusa VTT E-153457 [PVSK]
195277
195203
-
Phe
GAA
[ENA]
¡û
>W1911635664
PVSK01000034
Bacillota
Weissella confusa VTT E-153457 [PVSK]
597
523
-
Phe
GAA
[ENA]
¡û
>W1911635700
PVSL01000002
Bacillota
Weissella confusa VTT E-143403 [PVSL]
1462
1536
+
Phe
GAA
[ENA]
¡û
>W1911635741
PVSL01000007
Bacillota
Weissella confusa VTT E-143403 [PVSL]
232688
232614
-
Phe
GAA
[ENA]
¡û
>W1911635779
PVSM01000006
Bacillota
Weissella confusa VTT E-072748 [PVSM]
1462
1536
+
Phe
GAA
[ENA]
¡û
>W1911635815
PVSM01000019
Bacillota
Weissella confusa VTT E-072748 [PVSM]
82694
82620
-
Phe
GAA
[ENA]
¡û
>W1911635858
PVSN01000021
Bacillota
Weissella confusa VTT E-062653 [PVSN]
1471
1545
+
Phe
GAA
[ENA]
¡û
>W1911635895
PVSN01000074
Bacillota
Weissella confusa VTT E-062653 [PVSN]
22585
22511
-
Phe
GAA
[ENA]
¡û
>W1911635934
PVSO01000019
Bacillota
Weissella confusa VTT E-95616 [PVSO]
1303
1377
+
Phe
GAA
[ENA]
¡û
>W1911635971
PVSO01000063
Bacillota
Weissella confusa VTT E-95616 [PVSO]
4830
4756
-
Phe
GAA
[ENA]
¡û
>W1911636012
PVSP01000004
Bacillota
Weissella confusa VTT E-90393 [PVSP]
1462
1536
+
Phe
GAA
[ENA]
¡û
>W1911636052
PVSP01000021
Bacillota
Weissella confusa VTT E-90393 [PVSP]
236848
236774
-
Phe
GAA
[ENA]
¡û
>W1810576374
QENM01000003
Bacillota
Weissella confusa 32 [QENM]
77511
77585
+
Phe
GAA
[ENA]
¡û
>W1810576397
QENM01000004
Bacillota
Weissella confusa 32 [QENM]
1462
1536
+
Phe
GAA
[ENA]
¡û
>W1810784468
QRAS01000001
Bacillota
Weissella soli CECT 7031 [QRAS]
830889
830815
-
Phe
GAA
[ENA]
¡û
>W1810784492
QRAS01000003
Bacillota
Weissella soli CECT 7031 [QRAS]
26783
26857
+
Phe
GAA
[ENA]
¡û
>W1810816546
QSBT01000026
Bacillota
Weissella confusa AF03-13 [QSBT]
1394
1468
+
Phe
GAA
[ENA]
¡û
>W1810816552
QSBT01000028
Bacillota
Weissella confusa AF03-13 [QSBT]
244
170
-
Phe
GAA
[ENA]
¡û
>W1810828835
QSKQ01000004
Bacillota
Weissella cibaria AM27-24 [QSKQ]
154
228
+
Phe
GAA
[ENA]
¡û
>W1810828846
QSKQ01000005
Bacillota
Weissella cibaria AM27-24 [QSKQ]
99458
99532
+
Phe
GAA
[ENA]
¡û
>W1810828905
QSKR01000004
Bacillota
Weissella cibaria AM27-22LB [QSKR]
1412
1486
+
Phe
GAA
[ENA]
¡û
>W1810828922
QSKR01000006
Bacillota
Weissella cibaria AM27-22LB [QSKR]
99758
99832
+
Phe
GAA
[ENA]
¡û
>W1810842341
QSVX01000002
Bacillota
Weissella cibaria OF06-4 [QSVX]
99104
99178
+
Phe
GAA
[ENA]
¡û
>W1810842389
QSVX01000015
Bacillota
Weissella cibaria OF06-4 [QSVX]
6533
6607
+
Phe
GAA
[ENA]
¡û
>WENV11100336
AEKF01000082
Food metagenome, Jonggazip commercial cabbage kimchi
1711
1637
-
Phe
GAA
[ENA]
¡û
>WENV11100350
AEKF01000096
Food metagenome, Jonggazip commercial cabbage kimchi
1230
1304
+
Phe
GAA
[ENA]
¡û
>W1510500311
CRHY01000009
Bacillota
Streptococcus pneumoniae SMRU1312 [CRHY]
80104
80178
+
Phe
GAA
[ENA]
¡û
>W1510500356
CRHY01000036
Bacillota
Streptococcus pneumoniae SMRU1312 [CRHY]
1406
1480
+
Phe
GAA
[ENA]
¡û
>C11123742
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
922503
922577
+
Phe
GAA
[Ensembl]
¡û
>C11123761
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
1174290
1174364
+
Phe
GAA
[Ensembl]
¡û
>W1511479021
JWHT01000037
Bacillota
Weissella cibaria AB3b [JWHT]
64277
64203
-
Phe
GAA
[ENA]
¡û
>W1511479034
JWHT01000051
Bacillota
Weissella cibaria AB3b [JWHT]
11817
11743
-
Phe
GAA
[ENA]
¡û
>W1511479066
JWHU01000007
Bacillota
Weissella cibaria MG1 [JWHU]
42970
42896
-
Phe
GAA
[ENA]
¡û
>W1511479079
JWHU01000035
Bacillota
Weissella cibaria MG1 [JWHU]
245
319
+
Phe
GAA
[ENA]
¡û
>W1511479119
JWHV01000005
Bacillota
Weissella cibaria ff3PR [JWHV]
42949
42875
-
Phe
GAA
[ENA]
¡û
>W1511479144
JWHV01000020
Bacillota
Weissella cibaria ff3PR [JWHV]
33473
33399
-
Phe
GAA
[ENA]
¡û
>W11140004
AEKT01000032
Bacillota
Weissella cibaria KACC 11862 [AEKT]
35861
35787
-
Phe
GAA
[ENA]
¡û
>W11140028
AEKT01000057
Bacillota
Weissella cibaria KACC 11862 [AEKT]
39338
39264
-
Phe
GAA
[ENA]
¡û
>C161046768
CP012873
Bacillota
Weissella cibaria CH2 [CP012873]
1154551
1154625
+
Phe
GAA
[Ensembl]
¡û
>C161046822
CP012873
Bacillota
Weissella cibaria CH2 [CP012873]
239677
239603
-
Phe
GAA
[Ensembl]
¡û
>W121082007
AKGG01000004
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
95243
95317
+
Phe
GAA
[ENA]
¡û
>W121082028
AKGG01000005
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
245431
245505
+
Phe
GAA
[ENA]
¡û
>W1610857601
LQQL01000682
Bacillota
Weissella sp. DD23 [LQQL]
264
190
-
Phe
GAA
[ENA]
¡û
>W1610978298
LVYB01000002
Bacillota
Weissella cibaria [LVYB]
100111
100185
+
Phe
GAA
[ENA]
¡û
>W1610978349
LVYB01000033
Bacillota
Weissella cibaria [LVYB]
17037
16963
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK