This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289400 (73 seq.)
>W1711009045
LQQL01000287
Bacillota
Weissella sp. DD23 [LQQL]
1804
1878
+
Arg
CCT
[ENA]
¡û
>W1711168450
LVYB01000002
Bacillota
Weissella cibaria [LVYB]
160025
160099
+
Arg
CCT
[ENA]
¡û
>W1711572573
MNBZ01000002
Bacillota
Weissella confusa [MNBZ]
115336
115410
+
Arg
CCT
[ENA]
¡û
>W1711999884
NDXJ01000008
Bacillota
Weissella cibaria [NDXJ]
45004
44930
-
Arg
CCT
[ENA]
¡û
>C171026274
CP013726
Bacillota
Weissella cibaria CMS2 [CP013726]
210547
210473
-
Arg
CCT
-
¡û
>C171029832
CP013934
Bacillota
Weissella cibaria CMS3 [CP013934]
2092815
2092741
-
Arg
CCT
-
¡û
>C171029918
CP013936
Bacillota
Weissella cibaria CMU [CP013936]
2103297
2103223
-
Arg
CCT
-
¡û
>C171030927
CP014332
Bacillota
Weissella jogaejeotgali FOL01 [CP014332]
266305
266380
+
Arg
CCT
-
¡û
>WENV181429074
OGCW01021109
[OGCW] metagenome; Human gut stool
383
309
-
Arg
CCT
[ENA]
¢þ
>WENV181515744
OGGW01019562
[OGGW] metagenome; Human gut stool
1128
1054
-
Arg
CCT
[ENA]
¢þ
>WENV181557565
OGIV01038867
[OGIV] metagenome; Human gut stool
79
5
-
Arg
CCT
[ENA]
¢þ
>W141234688
BAWR01000006
Bacillota
Weissella oryzae SG25 [BAWR]
80434
80362
-
Arg
CCT
[ENA]
¡û
>W141236477
BBIK01000005
Bacillota
Weissella hellenica [BBIK]
149802
149728
-
Arg
CCT
[ENA]
¡û
>W141240378
CAGH01000013
Bacillota
Weissella confusa LBAE C39-2 [CAGH]
32939
32865
-
Arg
CCT
[ENA]
¡û
>WENV182610901
OJJW01002119
[OJJW] metagenome; faeces
1468
1542
+
Arg
CCT
[ENA]
¢þ
>WENV183511758
OMJG01003222
[OMJG] food metagenome; Cotija cheese
5136
5061
-
Arg
CCT
[ENA]
¢þ
>WENV183511766
OMJG01003469
[OMJG] food metagenome; Cotija cheese
5081
5156
+
Arg
CCT
[ENA]
¢þ
>C181047636
CP020928
Bacillota
Weissella cibaria M2 [CP020928]
268871
268945
+
Arg
CCT
-
¡û
>C181069753
CP022606
Bacillota
Weissella cibaria CMS1 [CP022606]
1979175
1979249
+
Arg
CCT
-
¡û
>C181082817
CP023501
Bacillota
Weissella paramesenteroides FDAARGOS_414 [CP023501]
1414916
1414841
-
Arg
CCT
-
¡û
>C181152894
CP027427
Bacillota
Weissella cibaria BM2 [CP027427]
1350021
1349947
-
Arg
CCT
-
¡û
>C191051663
CP027563
Bacillota
Weissella confusa VTT E-133279 [CP027563]
2003016
2002942
-
Arg
CCT
-
¡û
>C191051748
CP027565
Bacillota
Weissella confusa VTT E-90392 [CP027565]
2133574
2133500
-
Arg
CCT
-
¡û
>C191137848
CP035267
Bacillota
Weissella cibaria SRCM103448 [CP035267]
268449
268523
+
Arg
CCT
-
¡û
>C191188454
CP041193
Bacillota
Weissella cibaria CBA3612 [CP041193]
1732638
1732712
+
Arg
CCT
-
¡û
>W09127216
ACKU01000014
Bacillota
Weissella paramesenteroides ATCC 33313 [ACKU]
167966
167891
-
Arg
CCT
[ENA]
¡û
>W1910177449
BJDT01000002
Bacillota
Weissella sagaensis X0750 [BJDT]
149942
149868
-
Arg
CCT
[ENA]
¡û
>W1910177912
BJEC01000016
Bacillota
Weissella thailandensis JCM 10695 [BJEC]
33885
33810
-
Arg
CCT
[ENA]
¡û
>W1910178009
BJEE01000003
Bacillota
Weissella bombi DSM 28794 [BJEE]
165616
165542
-
Arg
CCT
[ENA]
¡û
>W1910178091
BJEF01000005
Bacillota
Weissella cibaria JCM 12495 [BJEF]
202704
202630
-
Arg
CCT
[ENA]
¡û
>W1910178138
BJEG01000002
Bacillota
Weissella hellenica NBRC 15553 [BJEG]
29462
29390
-
Arg
CCT
[ENA]
¡û
>W1910183989
BJOF01000006
Bacillota
Weissella hellenica NBRC 15553 [BJOF]
62927
62999
+
Arg
CCT
[ENA]
¡û
>W1910401461
FUWE01000021
Bacillota
Weissella confusa AB3E41 [FUWE]
39048
38974
-
Arg
CCT
[ENA]
¡û
>W1910638460
LRRC01000016
Bacillota
Weissella cibaria 110 [LRRC]
150374
150448
+
Arg
CCT
[ENA]
¡û
>W1911634738
PVRY01000023
Bacillota
Weissella confusa CCUG 61560 [PVRY]
130686
130612
-
Arg
CCT
[ENA]
¡û
>W1911634813
PVRZ01000028
Bacillota
Weissella confusa CCUG 51220 [PVRZ]
151659
151585
-
Arg
CCT
[ENA]
¡û
>W1911634878
PVSA01000025
Bacillota
Weissella confusa CCUG 39518 [PVSA]
164351
164277
-
Arg
CCT
[ENA]
¡û
>W1911634969
PVSB01000028
Bacillota
Weissella confusa CCUG 37938 [PVSB]
130805
130731
-
Arg
CCT
[ENA]
¡û
>W1911635043
PVSC01000016
Bacillota
Weissella confusa CCUG 36556 [PVSC]
191210
191136
-
Arg
CCT
[ENA]
¡û
>W1911635106
PVSD01000021
Bacillota
Weissella confusa CCUG 30969 [PVSD]
118292
118218
-
Arg
CCT
[ENA]
¡û
>W1911635186
PVSE01000026
Bacillota
Weissella confusa F71 [PVSE]
191215
191141
-
Arg
CCT
[ENA]
¡û
>W1911635275
PVSF01000019
Bacillota
Weissella confusa EJ61 [PVSF]
152158
152084
-
Arg
CCT
[ENA]
¡û
>W1911635342
PVSG01000024
Bacillota
Weissella confusa EJ52 [PVSG]
191201
191127
-
Arg
CCT
[ENA]
¡û
>W1911635420
PVSH01000029
Bacillota
Weissella confusa EJ12 [PVSH]
191033
190959
-
Arg
CCT
[ENA]
¡û
>W1911635511
PVSI01000042
Bacillota
Weissella confusa VTT E-163496 [PVSI]
40329
40255
-
Arg
CCT
[ENA]
¡û
>W1911635590
PVSJ01000010
Bacillota
Weissella confusa VTT E-153460 [PVSJ]
191135
191061
-
Arg
CCT
[ENA]
¡û
>W1911635651
PVSK01000027
Bacillota
Weissella confusa VTT E-153457 [PVSK]
150413
150339
-
Arg
CCT
[ENA]
¡û
>W1911635746
PVSL01000007
Bacillota
Weissella confusa VTT E-143403 [PVSL]
191135
191061
-
Arg
CCT
[ENA]
¡û
>W1911635820
PVSM01000019
Bacillota
Weissella confusa VTT E-072748 [PVSM]
41140
41066
-
Arg
CCT
[ENA]
¡û
>W1911635891
PVSN01000073
Bacillota
Weissella confusa VTT E-062653 [PVSN]
20732
20658
-
Arg
CCT
[ENA]
¡û
>W1911635967
PVSO01000060
Bacillota
Weissella confusa VTT E-95616 [PVSO]
45022
44948
-
Arg
CCT
[ENA]
¡û
>W1911636057
PVSP01000021
Bacillota
Weissella confusa VTT E-90393 [PVSP]
191212
191138
-
Arg
CCT
[ENA]
¡û
>W1810576379
QENM01000003
Bacillota
Weissella confusa 32 [QENM]
121150
121224
+
Arg
CCT
[ENA]
¡û
>W1810784806
QRAY01000015
Bacillota
Weissella thailandensis KCTC 3751 [QRAY]
15533
15608
+
Arg
CCT
[ENA]
¡û
>W1810816509
QSBT01000006
Bacillota
Weissella confusa AF03-13 [QSBT]
43091
43165
+
Arg
CCT
[ENA]
¡û
>W1810828851
QSKQ01000005
Bacillota
Weissella cibaria AM27-24 [QSKQ]
157849
157923
+
Arg
CCT
[ENA]
¡û
>W1810828927
QSKR01000006
Bacillota
Weissella cibaria AM27-22LB [QSKR]
158149
158223
+
Arg
CCT
[ENA]
¡û
>W1810842345
QSVX01000002
Bacillota
Weissella cibaria OF06-4 [QSVX]
157347
157421
+
Arg
CCT
[ENA]
¡û
>W1510500316
CRHY01000009
Bacillota
Streptococcus pneumoniae SMRU1312 [CRHY]
121657
121731
+
Arg
CCT
[ENA]
¡û
>W1511479004
JWHT01000029
Bacillota
Weissella cibaria AB3b [JWHT]
43548
43622
+
Arg
CCT
[ENA]
¡û
>W1511479057
JWHU01000006
Bacillota
Weissella cibaria MG1 [JWHU]
202030
201956
-
Arg
CCT
[ENA]
¡û
>W1511479132
JWHV01000017
Bacillota
Weissella cibaria ff3PR [JWHV]
39031
38957
-
Arg
CCT
[ENA]
¡û
>W11139983
AEKT01000015
Bacillota
Weissella cibaria KACC 11862 [AEKT]
33474
33400
-
Arg
CCT
[ENA]
¡û
>C161046827
CP012873
Bacillota
Weissella cibaria CH2 [CP012873]
187089
187015
-
Arg
CCT
[Ensembl]
¡û
>W121082051
AKGG01000016
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
190229
190157
-
Arg
CCT
[ENA]
¡û
>W1610514821
FMAO01000010
Bacillota
Weissella bombi [FMAO]
44246
44172
-
Arg
CCT
[ENA]
¡û
>W1610515242
FMAW01000004
Bacillota
Weissella hellenica [FMAW]
96263
96338
+
Arg
CCT
[ENA]
¡û
>W1610528108
JQAY01000001
Bacillota
Weissella confusa [JQAY]
121886
121960
+
Arg
CCT
[ENA]
¡û
>W1610857565
LQQL01000287
Bacillota
Weissella sp. DD23 [LQQL]
1804
1878
+
Arg
CCT
[ENA]
¡û
>W1610978302
LVYB01000002
Bacillota
Weissella cibaria [LVYB]
160025
160099
+
Arg
CCT
[ENA]
¡û
>W1710500511
FMAO01000010
Bacillota
Weissella bombi [FMAO]
44246
44172
-
Arg
CCT
[ENA]
¡û
>W1710500932
FMAW01000004
Bacillota
Weissella hellenica [FMAW]
96263
96338
+
Arg
CCT
[ENA]
¡û
>W1710629698
JQAY01000001
Bacillota
Weissella confusa [JQAY]
121886
121960
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK