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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289411 (47 seq.)
>W131126310
APXB01000173
Gammaproteobacteria
Escherichia coli 179550 [APXB]
10317
10392
+
Lys
TTT
[ENA]
¡û
>W131126390
APXC01000149
Gammaproteobacteria
Escherichia coli 180200 [APXC]
10583
10658
+
Lys
TTT
[ENA]
¡û
>W131139065
AQDB01000066
Gammaproteobacteria
Escherichia coli 2875000 [AQDB]
50764
50839
+
Lys
TTT
[ENA]
¡û
>W131139144
AQDC01000063
Gammaproteobacteria
Escherichia coli 2872800 [AQDC]
45623
45698
+
Lys
TTT
[ENA]
¡û
>W131139385
AQDF01000024
Gammaproteobacteria
Escherichia coli 2867750 [AQDF]
49341
49416
+
Lys
TTT
[ENA]
¡û
>W131139466
AQDG01000020
Gammaproteobacteria
Escherichia coli 2866750 [AQDG]
662
737
+
Lys
TTT
[ENA]
¡û
>W131139546
AQDH01000064
Gammaproteobacteria
Escherichia coli 2866550 [AQDH]
46655
46730
+
Lys
TTT
[ENA]
¡û
>W131139629
AQDI01000062
Gammaproteobacteria
Escherichia coli 2866450 [AQDI]
45624
45699
+
Lys
TTT
[ENA]
¡û
>W131139966
AQDM01000074
Gammaproteobacteria
Escherichia coli 2853500 [AQDM]
136571
136646
+
Lys
TTT
[ENA]
¡û
>W131140043
AQDN01000059
Gammaproteobacteria
Escherichia coli 2851500 [AQDN]
45296
45371
+
Lys
TTT
[ENA]
¡û
>W131140128
AQDO01000066
Gammaproteobacteria
Escherichia coli 2850750 [AQDO]
45839
45914
+
Lys
TTT
[ENA]
¡û
>W131140206
AQDP01000018
Gammaproteobacteria
Escherichia coli 2850400 [AQDP]
45623
45698
+
Lys
TTT
[ENA]
¡û
>W131140962
AQDY01000108
Gammaproteobacteria
Escherichia coli 2756500 [AQDY]
362
437
+
Lys
TTT
[ENA]
¡û
>W131145744
AQGH01000016
Gammaproteobacteria
Escherichia coli 2735000 [AQGH]
56047
56122
+
Lys
TTT
[ENA]
¡û
>W1711856348
MYHB01000043
Gammaproteobacteria
Salmonella enterica [MYHB]
3487
3562
+
Lys
TTT
[ENA]
¡û
>C171129446
LT615377
Gammaproteobacteria
Escherichia coli [LT615377]
777495
777570
+
Lys
TTT
-
¡û
>WENV180220658
OBAW01000170
[OBAW] human gut metagenome; human gut
9350
9425
+
Lys
TTT
[ENA]
¢þ
>WENV180220968
OBAX01001176
[OBAX] human gut metagenome; human gut
3003
3078
+
Lys
TTT
[ENA]
¢þ
>WENV180221211
OBAY01000194
[OBAY] human gut metagenome; human gut
9499
9574
+
Lys
TTT
[ENA]
¢þ
>WENV180221514
OBAZ01015869
[OBAZ] human gut metagenome; human gut
201
276
+
Lys
TTT
[ENA]
¢þ
>WENV180246751
OBDQ01000166
[OBDQ] human gut metagenome; human gut
9585
9660
+
Lys
TTT
[ENA]
¢þ
>WENV181116069
OEFA01000054
[OEFA] human gut metagenome; human gut
565
490
-
Lys
TTT
[ENA]
¢þ
>WENV181190317
OEOR01000071
[OEOR] soil metagenome; soil
23080
23155
+
Lys
TTT
[ENA]
¢þ
>C181079348
CP023349
Gammaproteobacteria
Escherichia coli ETEC-2264 [CP023349]
855008
855083
+
Lys
TTT
-
¡û
>C181097890
CP024240
Gammaproteobacteria
Escherichia coli O114:H49 90-9280 [CP024240]
4697623
4697698
+
Lys
TTT
-
¡û
>C191063298
CP029239
Gammaproteobacteria
Escherichia coli BH212 [CP029239]
768539
768614
+
Lys
TTT
-
¡û
>W143016485
JJLP01000011
Gammaproteobacteria
Escherichia coli 1-182-04_S4_C1 [JJLP]
545
617
+
Lys
TTT
[ENA]
¡û
>W1910195021
FAVU01000044
Gammaproteobacteria
Escherichia coli ED411 [FAVU]
576
501
-
Lys
TTT
[ENA]
¡û
>W1910447858
FWIF01000002
Gammaproteobacteria
Klebsiella pneumoniae VRCO0024 [FWIF]
72974
72899
-
Lys
TTT
[ENA]
¡û
>W1910955941
NJSI01000035
Gammaproteobacteria
Escherichia coli MOD1-EC2813 [NJSI]
44071
44146
+
Lys
TTT
[ENA]
¡û
>W1910995216
NKYL01000068
Gammaproteobacteria
Escherichia coli LH30 [NKYL]
224
299
+
Lys
TTT
[ENA]
¡û
>W1810581814
QETZ01000049
Gammaproteobacteria
Escherichia coli E205 [QETZ]
21631
21556
-
Lys
TTT
[ENA]
¡û
>W1810589112
QFSF01000271
Gammaproteobacteria
Escherichia coli 09-087 [QFSF]
41861
41936
+
Lys
TTT
[ENA]
¡û
>W1810589148
QFSG01000039
Gammaproteobacteria
Escherichia coli 09-185 [QFSG]
42154
42229
+
Lys
TTT
[ENA]
¡û
>W1810589293
QFSH01000153
Gammaproteobacteria
Escherichia coli 10-085 [QFSH]
14193
14268
+
Lys
TTT
[ENA]
¡û
>C151077156
CP011113
Gammaproteobacteria
Escherichia coli RR1 [CP011113]
763942
764017
+
Lys
TTT
-
¡û
>C151104522
LN832404
Gammaproteobacteria
Escherichia coli K-12 [LN832404]
777495
777570
+
Lys
TTT
[Ensembl]
¡û
>W1530006446
CVKC01000019
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 CH36 [CVKC]
75786
75858
+
Lys
TTT
[ENA]
¡û
>W1530019893
JNFR01000025
Gammaproteobacteria
Klebsiella pneumoniae KPPR1 [JNFR]
59472
59544
+
Lys
TTT
[ENA]
¡û
>W1511540679
JZEA01000104
Gammaproteobacteria
Escherichia coli St. Olav174 [JZEA]
37446
37371
-
Lys
TTT
[ENA]
¡û
>W1610455951
FKGH01000002
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKGH]
347125
347200
+
Lys
TTT
[ENA]
¡û
>W1730036326
MXBR01000052
Gammaproteobacteria
Salmonella enterica [MXBR]
4116
4188
+
Lys
TTT
[ENA]
¡û
>W1730037429
MYQT01000026
Gammaproteobacteria
Salmonella enterica [MYQT]
4030
4102
+
Lys
TTT
[ENA]
¡û
>W1730037733
MZCE01000192
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Grumpensis [MZCE]
209
281
+
Lys
TTT
[ENA]
¡û
>W1730037764
MZDP01000143
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Newport [MZDP]
9993
10065
+
Lys
TTT
[ENA]
¡û
>W1710455579
FKGH01000002
Gammaproteobacteria
Enterobacter hormaechei cloacae [FKGH]
347125
347200
+
Lys
TTT
[ENA]
¡û
>W133001929
AODX01000111
Gammaproteobacteria
Escherichia coli 09BKT078844 [AODX]
215
287
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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