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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289673 (93 seq.)
>W1710777265
LJBJ02000002
Actinomycetota
Rothia kristinae [LJBJ]
89309
89382
+
Ala
CGC
[ENA]
¡û
>W1710809815
LKEV01000005
Actinomycetota
Corynebacterium lowii [LKEV]
148817
148742
-
Ala
CGC
[ENA]
¡û
>W1710821346
LKST01000003
Actinomycetota
Corynebacterium oculi [LKST]
71674
71749
+
Ala
CGC
[ENA]
¡û
>W1710996402
LQBK01000002
Actinomycetota
Kocuria polaris [LQBK]
305449
305376
-
Ala
CGC
[ENA]
¡û
>W1711095106
LTGN01000020
Actinomycetota
Corynebacterium sp. HMSC063F04 [LTGN]
57177
57252
+
Ala
CGC
[ENA]
¡û
>W131159276
AQUX01000004
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
120670
120597
-
Ala
CGC
[ENA]
¡û
>W1711112767
LTXS01000008
Actinomycetota
Corynebacterium sp. HMSC065H09 [LTXS]
28416
28491
+
Ala
CGC
[ENA]
¡û
>W1711185730
LWNQ01000010
Actinomycetota
Dermabacter sp. HMSC08H10 [LWNQ]
48166
48239
+
Ala
CGC
[ENA]
¡û
>W1711186316
LWOD01000001
Actinomycetota
Dermabacter sp. HMSC06F07 [LWOD]
46421
46494
+
Ala
CGC
[ENA]
¡û
>W1711482538
MKAX01000202
Actinomycetota
Corynebacterium sp. BCW_4722 concisus [MKAX]
46441
46516
+
Ala
CGC
[ENA]
¡û
>W1711511704
MLCQ01000022
Actinomycetota
Corynebacterium sp. NML140438 [MLCQ]
32803
32878
+
Ala
CGC
[ENA]
¡û
>W1711589218
MODZ01000010
Actinomycetota
Rothia kristinae [MODZ]
20736
20809
+
Ala
CGC
[ENA]
¡û
>W131098126
AORC01000016
Actinomycetota
Brachybacterium muris UCD-AY4 [AORC]
44194
44119
-
Ala
CGC
[ENA]
¡û
>W131206272
ATFO01000007
Actinomycetota
Dermabacter sp. HFH0086 [ATFO]
50283
50356
+
Ala
CGC
[ENA]
¡û
>W131230319
AUHN01000004
Actinomycetota
Jonesia quinghaiensis DSM 15701 [AUHN]
414226
414151
-
Ala
CGC
[ENA]
¡û
>W131000458
AGEM01000010
Actinomycetota
Corynebacterium sp. HFH0082 [AGEM]
99918
99843
-
Ala
CGC
[ENA]
¡û
>W131160878
AQXB01000007
Actinomycetota
Corynebacterium mastitidis DSM 44356 [AQXB]
153579
153504
-
Ala
CGC
[ENA]
¡û
>WENV180312821
OBJZ01000187
[OBJZ] human gut metagenome; fecal sample
23872
23945
+
Ala
CGC
[ENA]
¢þ
>WENV180554480
OCJN01002504
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
342
415
+
Ala
CGC
[ENA]
¢þ
>WENV181609536
OGLN01056391
[OGLN] metagenome; Human gut stool
324
397
+
Ala
CGC
[ENA]
¢þ
>WENV182642190
OJLL01004556
[OJLL] metagenome; surface
476
549
+
Ala
CGC
[ENA]
¢þ
>WENV182645774
OJLZ01002373
[OJLZ] metagenome; surface
1529
1602
+
Ala
CGC
[ENA]
¢þ
>WENV182797411
OJSX01001129
[OJSX] human gut metagenome; human gut
628
701
+
Ala
CGC
[ENA]
¢þ
>WENV182812841
OJXV01000105
[OJXV] human gut metagenome; human gut
1183
1110
-
Ala
CGC
[ENA]
¢þ
>WENV182825513
OKCK01000190
[OKCK] human gut metagenome; human gut
1147
1074
-
Ala
CGC
[ENA]
¢þ
>WENV182962594
OKWN01008427
[OKWN] human gut metagenome; stool
566
493
-
Ala
CGC
[ENA]
¢þ
>WENV183511911
OMJG01012713
[OMJG] food metagenome; Cotija cheese
868
794
-
Ala
CGC
[ENA]
¢þ
>W141400448
JDRS01000011
Actinomycetota
Dermabacter hominis 1368 [JDRS]
1175
1100
-
Ala
CGC
[ENA]
¡û
>C181039021
CP019688
Actinomycetota
Corynebacterium glaucum DSM 30827 [CP019688]
763888
763961
+
Ala
CGC
-
¡û
>C181212435
LS483423
Actinomycetota
Jonesia denitrificans NCTC10816 [LS483423]
28495
28568
+
Ala
CGC
-
¡û
>C191124713
CP034412
Actinomycetota
Glutamicibacter creatinolyticus LGCM 259 [CP034412]
1791630
1791703
+
Ala
CGC
-
¡û
>C191134682
CP035103
Actinomycetota
Kocuria rosea ATCC 186 [CP035103]
1348682
1348608
-
Ala
CGC
-
¡û
>W141531760
JHEL01000015
Actinomycetota
Curtobacterium sp. S6 [JHEL]
900377
900450
+
Ala
CGC
[ENA]
¡û
>C191210270
LR134391
Actinomycetota
Kocuria rosea NCTC7514 [LR134391]
2955380
2955454
+
Ala
CGC
-
¡û
>C191212195
LR134487
Actinomycetota
Kocuria rosea NCTC7512 [LR134487]
244374
244300
-
Ala
CGC
-
¡û
>W09109169
ABUA01000010
Actinomycetota
Jonesia denitrificans DSM 20603 [ABUA]
48857
48784
-
Ala
CGC
[ENA]
¡û
>W1910183491
BJNT01000021
Actinomycetota
Corynebacterium variabile NBRC 15286 [BJNT]
29643
29716
+
Ala
CGC
[ENA]
¡û
>W1910321400
FSEE01000034
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 417 [FSEE]
51416
51489
+
Ala
CGC
[ENA]
¡û
>W1910442277
FWFC01000004
Actinomycetota
Kocuria massiliensis Marseille-P3598 [FWFC]
666716
666643
-
Ala
CGC
[ENA]
¡û
>W1911114600
NOIR01000002
Actinomycetota
Kocuria sp. 257 [NOIR]
781470
781543
+
Ala
CGC
[ENA]
¡û
>W1911200077
NREL01000007
Actinomycetota
Mycobacteroides abscessus subsp. abscessus A324 [NREL]
292278
292351
+
Ala
CGC
[ENA]
¡û
>W1911200101
NREM01000001
Actinomycetota
Mycobacteroides abscessus subsp. abscessus A229 [NREM]
461851
461924
+
Ala
CGC
[ENA]
¡û
>W1911621428
PQNE01000008
Actinomycetota
Corynebacterium bovis WCM5 [PQNE]
17282
17355
+
Ala
CGC
[ENA]
¡û
>W1911621512
PQNF01000116
Actinomycetota
Corynebacterium bovis WCM4 [PQNF]
4385
4458
+
Ala
CGC
[ENA]
¡û
>W1911621532
PQNG01000009
Actinomycetota
Corynebacterium bovis WCM3 - SMALL [PQNG]
12856
12929
+
Ala
CGC
[ENA]
¡û
>W1911621586
PQNH01000011
Actinomycetota
Corynebacterium bovis WCM3 - LARGE [PQNH]
12810
12883
+
Ala
CGC
[ENA]
¡û
>W1911621658
PQNI01000073
Actinomycetota
Corynebacterium bovis WCM1 [PQNI]
148
221
+
Ala
CGC
[ENA]
¡û
>W1911621681
PQNJ01000005
Actinomycetota
Corynebacterium bovis MI 82-1021 [PQNJ]
22746
22673
-
Ala
CGC
[ENA]
¡û
>W1911621764
PQNK01000009
Actinomycetota
Corynebacterium bovis F6900 [PQNK]
82060
82133
+
Ala
CGC
[ENA]
¡û
>W1911621794
PQNL01000037
Actinomycetota
Corynebacterium bovis CUAMC1 - SMALL [PQNL]
45
118
+
Ala
CGC
[ENA]
¡û
>W1911621855
PQNM01000177
Actinomycetota
Corynebacterium bovis CUAMC1 - LARGE [PQNM]
33
106
+
Ala
CGC
[ENA]
¡û
>W1911621915
PQNN01000067
Actinomycetota
Corynebacterium bovis 17-0240 - SMALL [PQNN]
45
118
+
Ala
CGC
[ENA]
¡û
>W1911622018
PQNP01000020
Actinomycetota
Corynebacterium bovis 16-3465 [PQNP]
40214
40287
+
Ala
CGC
[ENA]
¡û
>W1911622069
PQNQ01000047
Actinomycetota
Corynebacterium bovis 16-2004 [PQNQ]
12768
12695
-
Ala
CGC
[ENA]
¡û
>W1911622081
PQNR01000009
Actinomycetota
Corynebacterium bovis 16-1683 - SMALL [PQNR]
10662
10589
-
Ala
CGC
[ENA]
¡û
>W1911622147
PQNS01000057
Actinomycetota
Corynebacterium bovis 16-1683 - LARGE [PQNS]
10708
10635
-
Ala
CGC
[ENA]
¡û
>W1911622215
PQNT01000020
Actinomycetota
Corynebacterium bovis 13-1426 [PQNT]
12581
12508
-
Ala
CGC
[ENA]
¡û
>W1911622270
PQNU01000019
Actinomycetota
Corynebacterium bovis 12-5346 [PQNU]
12587
12514
-
Ala
CGC
[ENA]
¡û
>W1911622330
PQNW01000002
Actinomycetota
Corynebacterium bovis 4828 [PQNW]
209945
209872
-
Ala
CGC
[ENA]
¡û
>W1911622403
PQNX01000004
Actinomycetota
Corynebacterium bovis 4826 [PQNX]
186804
186877
+
Ala
CGC
[ENA]
¡û
>W1911709363
QPKL01000013
Actinomycetota
Kocuria sp. CPCC 104605 [QPKL]
25203
25276
+
Ala
CGC
[ENA]
¡û
>W1810155026
PJAF01000002
Actinomycetota
Corynebacterium mastitidis 16-1433 [PJAF]
45089
45164
+
Ala
CGC
[ENA]
¡û
>W1810187332
PKHM01000010
Actinomycetota
Dermabacter hominis UMB0490 [PKHM]
8508
8435
-
Ala
CGC
[ENA]
¡û
>W1810584763
QFBL01000003
Actinomycetota
Kocuria rosea ATCC 49321 [QFBL]
318712
318638
-
Ala
CGC
[ENA]
¡û
>W1810700978
QMDP01000194
Actinomycetota
Kocuria rhizophila TNDT1 [QMDP]
128
201
+
Ala
CGC
[ENA]
¡û
>C151012224
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
843273
843346
+
Ala
CGC
[Ensembl]
¡û
>C151013267
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
681695
681620
-
Ala
CGC
-
¡û
>C151045581
CP009215
Actinomycetota
Corynebacterium ureicelerivorans IMMIB RIV-2301 [CP009215]
716187
716260
+
Ala
CGC
[Ensembl]
¡û
>W1511387245
JSUH01000009
Actinomycetota
Kocuria polaris CMS 76or [JSUH]
185419
185494
+
Ala
CGC
[ENA]
¡û
>W1511442785
JUSD01000048
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
28669
28744
+
Ala
CGC
[ENA]
¡û
>W1511459369
JVKI01000019
Actinomycetota
Leifsonia xyli 356_LXYL [JVKI]
1445
1520
+
Ala
CGC
[ENA]
¡û
>W1511463621
JVOW01000034
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
65315
65240
-
Ala
CGC
[ENA]
¡û
>W11141102
AENJ01000274
Actinomycetota
Corynebacterium bovis DSM 20582 [AENJ]
14949
14874
-
Ala
CGC
[ENA]
¡û
>W1511638446
LDNX01000019
Actinomycetota
Kocuria sp. SM24M-10 [LDNX]
10135
10210
+
Ala
CGC
[ENA]
¡û
>C161039595
CP012117
Actinomycetota
Dermabacter vaginalis AD1-86 [CP012117]
187221
187294
+
Ala
CGC
[Ensembl]
¡û
>C161072558
CP014480
Actinomycetota
Kocuria turfanensis HO-9042 [CP014480]
1163612
1163687
+
Ala
CGC
-
¡û
>W1610069464
BCSM01000013
Actinomycetota
Rothia kristinae NBRC 15354 [BCSM]
48623
48696
+
Ala
CGC
[ENA]
¡û
>W1610590062
LDRD01000007
Actinomycetota
Rothia kristinae [LDRD]
23413
23340
-
Ala
CGC
[ENA]
¡û
>W1610590130
LDRE01000045
Actinomycetota
Rothia kristinae [LDRE]
8970
9043
+
Ala
CGC
[ENA]
¡û
>W1610590205
LDRG01000043
Actinomycetota
Rothia kristinae [LDRG]
8970
9043
+
Ala
CGC
[ENA]
¡û
>W1610590239
LDRH01000025
Actinomycetota
Rothia kristinae [LDRH]
31340
31267
-
Ala
CGC
[ENA]
¡û
>W1610590335
LDRJ01000052
Actinomycetota
Rothia kristinae [LDRJ]
10899
10826
-
Ala
CGC
[ENA]
¡û
>W1610641451
LJBJ02000002
Actinomycetota
Rothia kristinae [LJBJ]
89309
89382
+
Ala
CGC
[ENA]
¡û
>W1610673870
LKEV01000005
Actinomycetota
Corynebacterium lowii [LKEV]
148817
148742
-
Ala
CGC
[ENA]
¡û
>W1610685308
LKST01000003
Actinomycetota
Corynebacterium oculi [LKST]
71674
71749
+
Ala
CGC
[ENA]
¡û
>W1610851059
LQBK01000002
Actinomycetota
Kocuria polaris [LQBK]
305449
305376
-
Ala
CGC
[ENA]
¡û
>W1710066837
BCSM01000013
Actinomycetota
Rothia kristinae NBRC 15354 [BCSM]
48623
48696
+
Ala
CGC
[ENA]
¡û
>W1710563053
FOPJ01000018
Actinomycetota
Corynebacterium spheniscorum [FOPJ]
22227
22302
+
Ala
CGC
[ENA]
¡û
>W1710709342
LDRD01000007
Actinomycetota
Rothia kristinae [LDRD]
23413
23340
-
Ala
CGC
[ENA]
¡û
>W1710709410
LDRE01000045
Actinomycetota
Rothia kristinae [LDRE]
8970
9043
+
Ala
CGC
[ENA]
¡û
>W1710709485
LDRG01000043
Actinomycetota
Rothia kristinae [LDRG]
8970
9043
+
Ala
CGC
[ENA]
¡û
>W1710709519
LDRH01000025
Actinomycetota
Rothia kristinae [LDRH]
31340
31267
-
Ala
CGC
[ENA]
¡û
>W1710709615
LDRJ01000052
Actinomycetota
Rothia kristinae [LDRJ]
10899
10826
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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