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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289677 (47 seq.)
>W1710996426
LQBK01000022
Actinomycetota
Kocuria polaris [LQBK]
64005
64078
+
Arg
CCT
[ENA]
¡û
>W1711093362
LTEY01000003
Actinomycetota
Kocuria sp. HMSC066H03 [LTEY]
44192
44267
+
Arg
CCT
[ENA]
¡û
>W1711491803
MKJW01000086
Actinomycetota
Kocuria sp. CNJ-770 [MKJW]
49367
49442
+
Arg
CCT
[ENA]
¡û
>W131099045
AOSQ01000013
Actinomycetota
Kocuria sp. UCD-OTCP [AOSQ]
17605
17532
-
Arg
CCT
[ENA]
¡û
>C08005768
AP009152
Actinomycetota
Kocuria rhizophila DC2201 [AP009152]
2076177
2076104
-
Arg
CCT
[Ensembl]
¡û
>WENV183511662
OMJG01001591
[OMJG] food metagenome; Cotija cheese
9735
9808
+
Arg
CCT
[ENA]
¢þ
>C181055948
CP022039
Actinomycetota
Kocuria rhizophila FDAARGOS_302 [CP022039]
2449104
2449177
+
Arg
CCT
-
¡û
>C181187315
CP030039
Actinomycetota
Kocuria sp. BT304 [CP030039]
2243963
2243890
-
Arg
CCT
-
¡û
>C191134667
CP035103
Actinomycetota
Kocuria rosea ATCC 186 [CP035103]
2976468
2976395
-
Arg
CCT
-
¡û
>C191210255
LR134391
Actinomycetota
Kocuria rosea NCTC7514 [LR134391]
1429766
1429839
+
Arg
CCT
-
¡û
>C191210983
LR134409
Actinomycetota
Kocuria rhizophila NCTC8340 [LR134409]
743877
743950
+
Arg
CCT
-
¡û
>C191212180
LR134487
Actinomycetota
Kocuria rosea NCTC7512 [LR134487]
1789879
1789806
-
Arg
CCT
-
¡û
>W1910183601
BJNW01000003
Actinomycetota
Kocuria varians NBRC 15358 [BJNW]
147260
147187
-
Arg
CCT
[ENA]
¡û
>W1910636716
LOMZ01000001
Actinomycetota
Kocuria flava S43 [LOMZ]
3481243
3481168
-
Arg
CCT
[ENA]
¡û
>W1911114685
NOIT01000006
Actinomycetota
Kocuria carniphila CCM 132 [NOIT]
55116
55189
+
Arg
CCT
[ENA]
¡û
>W1911149932
NPGE01000001
Actinomycetota
Kocuria varians 80 [NPGE]
1000680
1000753
+
Arg
CCT
[ENA]
¡û
>W1911200163
NREM01000026
Actinomycetota
Mycobacteroides abscessus subsp. abscessus A229 [NREM]
62766
62693
-
Arg
CCT
[ENA]
¡û
>W1911243187
NSGI01000002
Actinomycetota
Kocuria sp. WRN011 [NSGI]
358184
358111
-
Arg
CCT
[ENA]
¡û
>W1911245615
NSKF01000011
Actinomycetota
Kocuria sp. WN036 [NSKF]
66007
66080
+
Arg
CCT
[ENA]
¡û
>W1911582727
PHOA01000014
Actinomycetota
Kocuria tytonicola DSM 104133 [PHOA]
6029
6102
+
Arg
CCT
[ENA]
¡û
>W1810189432
PKJA01000004
Actinomycetota
Kocuria rhizophila UMB0131 [PKJA]
79790
79717
-
Arg
CCT
[ENA]
¡û
>W1810197076
PNJG01000070
Actinomycetota
Kocuria tytonis 442 [PNJG]
11625
11552
-
Arg
CCT
[ENA]
¡û
>W1810200201
PNRK01000012
Actinomycetota
Kocuria rhizophila D2 [PNRK]
84938
84865
-
Arg
CCT
[ENA]
¡û
>W1810368307
PVZO01000001
Actinomycetota
Arthrobacter woluwensis NM-35 [PVZO]
562113
562186
+
Arg
CCT
[ENA]
¡û
>W1810584697
QFBJ01000007
Actinomycetota
Kocuria rosea ATCC 186 [QFBJ]
109860
109787
-
Arg
CCT
[ENA]
¡û
>W1810584713
QFBK01000003
Actinomycetota
Kocuria rosea ATCC 516 [QFBK]
65461
65534
+
Arg
CCT
[ENA]
¡û
>W1810584786
QFBL01000008
Actinomycetota
Kocuria rosea ATCC 49321 [QFBL]
65568
65641
+
Arg
CCT
[ENA]
¡û
>W1810701000
QMDP01000703
Actinomycetota
Kocuria rhizophila TNDT1 [QMDP]
2342
2417
+
Arg
CCT
[ENA]
¡û
>W1511387242
JSUH01000008
Actinomycetota
Kocuria polaris CMS 76or [JSUH]
44432
44505
+
Arg
CCT
[ENA]
¡û
>W1511459355
JVKI01000005
Actinomycetota
Leifsonia xyli 356_LXYL [JVKI]
327526
327453
-
Arg
CCT
[ENA]
¡û
>W1511489643
JWTC01000006
Actinomycetota
Kocuria rhizophila TPW45 [JWTC]
48649
48724
+
Arg
CCT
[ENA]
¡û
>W1511638450
LDNX01000030
Actinomycetota
Kocuria sp. SM24M-10 [LDNX]
4350
4275
-
Arg
CCT
[ENA]
¡û
>W1511681655
LFIY01000030
Actinomycetota
Kocuria rhizophila 14ASP [LFIY]
21048
21123
+
Arg
CCT
[ENA]
¡û
>W11163697
AFID01000004
Actinomycetota
Kocuria rhizophila P7-4 [AFID]
221888
221813
-
Arg
CCT
[ENA]
¡û
>C161054275
CP013254
Actinomycetota
Kocuria flava HO-9041 [CP013254]
1474901
1474976
+
Arg
CCT
[Ensembl]
¡û
>C161072567
CP014480
Actinomycetota
Kocuria turfanensis HO-9042 [CP014480]
3259073
3259148
+
Arg
CCT
-
¡û
>W1610067362
BCQN01000004
Actinomycetota
Arthrobacter woluwensis NBRC 107840 [BCQN]
43670
43597
-
Arg
CCT
[ENA]
¡û
>W121070982
AJXN01000087
Actinomycetota
Kocuria atrinae C3-8 [AJXN]
1871
1946
+
Arg
CCT
[ENA]
¡û
>W1610112334
CZJU01000062
Actinomycetota
Kocuria salsicia [CZJU]
7687
7612
-
Arg
CCT
[ENA]
¡û
>W1610112450
CZJW01000052
Actinomycetota
Kocuria rhizophila [CZJW]
47503
47576
+
Arg
CCT
[ENA]
¡û
>W1610112499
CZJX01000062
Actinomycetota
Kocuria varians [CZJX]
43594
43667
+
Arg
CCT
[ENA]
¡û
>W1610851083
LQBK01000022
Actinomycetota
Kocuria polaris [LQBK]
64005
64078
+
Arg
CCT
[ENA]
¡û
>W1710064735
BCQN01000004
Actinomycetota
Arthrobacter woluwensis NBRC 107840 [BCQN]
43670
43597
-
Arg
CCT
[ENA]
¡û
>W1710115038
CZJU01000062
Actinomycetota
Kocuria salsicia [CZJU]
7687
7612
-
Arg
CCT
[ENA]
¡û
>W1710115154
CZJW01000052
Actinomycetota
Kocuria rhizophila [CZJW]
47503
47576
+
Arg
CCT
[ENA]
¡û
>W1710115203
CZJX01000062
Actinomycetota
Kocuria varians [CZJX]
43594
43667
+
Arg
CCT
[ENA]
¡û
>W1710535409
FNSN01000003
Actinomycetota
Arthrobacter woluwensis [FNSN]
3196555
3196628
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK