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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289689 (60 seq.)
>W1710785369
LJHU01000058
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
67252
67328
+
Val
TAC
[ENA]
¡û
>W1710873820
LMNC01000002
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
125249
125325
+
Val
TAC
[ENA]
¡û
>W1710876116
LMOY01000012
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
30656
30732
+
Val
TAC
[ENA]
¡û
>W1710877298
LMPZ01000002
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
910741
910817
+
Val
TAC
[ENA]
¡û
>W1711407947
MGLI01000001
Alphaproteobacteria
Caulobacterales bacterium GWE1_67_11 [MGLI]
11568
11492
-
Val
TAC
[ENA]
¡û
>W1711407984
MGLM01000665
Alphaproteobacteria
Caulobacterales bacterium RIFOXYA1_FULL_67_7 [MGLM]
4959
5035
+
Val
TAC
[ENA]
¡û
>W1711408003
MGLN01000092
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
8766
8690
-
Val
TAC
[ENA]
¡û
>W1711718103
MTHE01000003
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
234144
234068
-
Val
TAC
[ENA]
¡û
>W1712106203
NIVP01000028
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
17683
17759
+
Val
TAC
[ENA]
¡û
>C171094873
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
2219111
2219035
-
Val
TAC
-
¡û
>W131052408
AMYY01000001
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
168895
168819
-
Val
TAC
[ENA]
¡û
>WENV180014298
FPIC01152340
[FPIC] soil metagenome; Soil
312
236
-
Val
TAC
[ENA]
¢þ
>W141043000
AMFA01000039
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
3248
3172
-
Val
TAC
[ENA]
¡û
>WENV181384444
OFRI01001111
[OFRI] wastewater metagenome; Exp Tend VB 90WW
1467
1391
-
Val
TAC
[ENA]
¢þ
>WENV181732491
OGQD01044607
[OGQD] human gut metagenome; faeces
681
605
-
Val
TAC
[ENA]
¢þ
>W08010842
ABRU01000043
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
75360
75287
-
Val
TAC
[ENA]
¡û
>WENV183727513
PJTP01000009
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
342733
342809
+
Val
TAC
[ENA]
¢þ
>WENV183728327
PJTQ01000015
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
240557
240481
-
Val
TAC
[ENA]
¢þ
>WENV183730944
PJTS01002411
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
3665
3589
-
Val
TAC
[ENA]
¢þ
>WENV183733310
PJTY01000844
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
12359
12283
-
Val
TAC
[ENA]
¢þ
>WENV183735459
PJUB01000010
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
167759
167835
+
Val
TAC
[ENA]
¢þ
>WENV183738842
PJUE01000287
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
15216
15292
+
Val
TAC
[ENA]
¢þ
>WENV183740168
PJUF01000570
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
7300
7376
+
Val
TAC
[ENA]
¢þ
>WENV170000500
AFAP01003368
[AFAP] human metagenome; nasopharyngeal aspirates
64
140
+
Val
TAC
[ENA]
¢þ
>WENV170646042
JQGF01014200
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
43
119
+
Val
TAC
[ENA]
¢þ
>WENV170784075
MCHG01000005
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
79060
78984
-
Val
TAC
[ENA]
¢þ
>C181056268
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
96497
96421
-
Val
TAC
-
¡û
>C191094009
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
2916706
2916630
-
Val
TAC
-
¡û
>C191134428
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
2040268
2040344
+
Val
TAC
-
¡û
>C191157408
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
1221293
1221217
-
Val
TAC
-
¡û
>C191166105
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
1844353
1844429
+
Val
TAC
-
¡û
>C191220447
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
1886365
1886289
-
Val
TAC
-
¡û
>W141712427
JMQR01000009
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
36753
36829
+
Val
TAC
[ENA]
¡û
>W141731215
JNIX01000007
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
438884
438960
+
Val
TAC
[ENA]
¡û
>W1910182679
BJNC01000005
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
13728
13652
-
Val
TAC
[ENA]
¡û
>W1910374329
FUIE01000045
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
27019
27095
+
Val
TAC
[ENA]
¡û
>W1910725234
MGLJ01000582
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
3356
3432
+
Val
TAC
[ENA]
¡û
>W1910725284
MGLL01000049
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_12_FULL_68_13 [MGLL]
19575
19499
-
Val
TAC
[ENA]
¡û
>W1911566730
PCPB01000001
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
521761
521837
+
Val
TAC
[ENA]
¡û
>W1911566940
PCPF01000001
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
521761
521837
+
Val
TAC
[ENA]
¡û
>W1911567188
PCPK01000001
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
76867
76791
-
Val
TAC
[ENA]
¡û
>W1911567278
PCPM01000003
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
76880
76804
-
Val
TAC
[ENA]
¡û
>W1911567407
PCPO01000019
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
76704
76628
-
Val
TAC
[ENA]
¡û
>W1810403754
PYJP01000009
Alphaproteobacteria
Mesorhizobium plurifarium LMG 11892 [PYJP]
13019
12943
-
Val
TAC
[ENA]
¡û
>W1810693148
QLLC01000004
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
3278
3202
-
Val
TAC
[ENA]
¡û
>W10109858
ADBM01000012
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
29485
29561
+
Val
TAC
[ENA]
¡û
>C10102197
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
1726453
1726529
+
Val
TAC
[Ensembl]
¡û
>W11112295
ADBM01000012
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
29485
29561
+
Val
TAC
[ENA]
¡û
>W11123424
ADUI01000091
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
21005
21081
+
Val
TAC
[ENA]
¡û
>W1511489481
JWSY01000024
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
28402
28478
+
Val
TAC
[ENA]
¡û
>W1511547891
JZRG01000018
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
128183
128107
-
Val
TAC
[ENA]
¡û
>W1511596070
LBNT01000011
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
217673
217597
-
Val
TAC
[ENA]
¡û
>C161089127
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
1315017
1314941
-
Val
TAC
[Ensembl]
¡û
>W1610074224
BCWM01000009
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
5293
5217
-
Val
TAC
[ENA]
¡û
>W1610649175
LJHU01000058
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
67252
67328
+
Val
TAC
[ENA]
¡û
>W1610736166
LMNC01000002
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
125249
125325
+
Val
TAC
[ENA]
¡û
>W1610738462
LMOY01000012
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
30656
30732
+
Val
TAC
[ENA]
¡û
>W1610739644
LMPZ01000002
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
910741
910817
+
Val
TAC
[ENA]
¡û
>W1710071342
BCWM01000009
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
5293
5217
-
Val
TAC
[ENA]
¡û
>W1710527032
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
647454
647378
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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