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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289691 (109 seq.)
>W1710836218
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
1460179
1460255
+
Met
CAT
[ENA]
¡û
>W1710836224
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
1068062
1067986
-
Met
CAT
[ENA]
¡û
>W1710914128
LNTC01000006
Campylobacterota
Aliarcobacter cryaerophilus [LNTC]
17184
17108
-
Met
CAT
[ENA]
¡û
>W1710914132
LNTC01000006
Campylobacterota
Aliarcobacter cryaerophilus [LNTC]
16766
16690
-
Met
CAT
[ENA]
¡û
>W1711055342
LRUS01000034
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
10
86
+
Met
CAT
[ENA]
¡û
>W1711055438
LRUV01000041
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
32657
32581
-
Met
CAT
[ENA]
¡û
>WENV180284223
OBID01021629
[OBID] metagenome; sludge
1
77
+
fMet
CAT
[ENA]
¢þ
>WENV181380393
OFRD01074488
[OFRD] wastewater metagenome; Exp Tend CN 100WW
516
591
+
fMet
CAT
[ENA]
¢þ
>WENV181732510
OGQD01045663
[OGQD] human gut metagenome; faeces
381
457
+
fMet
CAT
[ENA]
¢þ
>C08000246
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
1234491
1234567
+
Met
CAT
[Ensembl]
¡û
>C08000257
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
1876328
1876404
+
Met
CAT
[Ensembl]
¡û
>W141274757
JABW01000022
Campylobacterota
Aliarcobacter cibarius LMG 21996 [JABW]
46627
46551
-
Met
CAT
[ENA]
¡û
>W141274761
JABW01000022
Campylobacterota
Aliarcobacter cibarius LMG 21996 [JABW]
46199
46123
-
Met
CAT
[ENA]
¡û
>W141289887
JARS01000026
Campylobacterota
Aliarcobacter faecis AF1078 [JARS]
18602
18526
-
Met
CAT
[ENA]
¡û
>W141289939
JART01000023
Campylobacterota
Arcobacter sp. AF1028 [JART]
18602
18526
-
Met
CAT
[ENA]
¡û
>W141289984
JARU01000015
Campylobacterota
Aliarcobacter lanthieri AF1440 [JARU]
32109
32185
+
Met
CAT
[ENA]
¡û
>W141290043
JARV01000012
Campylobacterota
Aliarcobacter lanthieri AF1581 [JARV]
59423
59499
+
Met
CAT
[ENA]
¡û
>W141291669
JATO01000018
Campylobacterota
Aliarcobacter lanthieri AF1430 [JATO]
30831
30907
+
Met
CAT
[ENA]
¡û
>WENV183709309
PDWI01026805
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4819
4895
+
fMet
CAT
[ENA]
¢þ
>WENV170658139
JTFP01058968
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
332
408
+
Met
CAT
[ENA]
¢þ
>WENV170658623
JTFP01164019
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
918
994
+
Met
CAT
[ENA]
¢þ
>C181199804
CP031367
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [CP031367]
1479265
1479341
+
Met
CAT
-
¡û
>C181225243
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
1234485
1234561
+
Met
CAT
-
¡û
>C181225254
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
1876321
1876397
+
Met
CAT
-
¡û
>C191084423
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
1451747
1451823
+
Met
CAT
-
¡û
>C191084578
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
1365886
1365962
+
Met
CAT
-
¡û
>C191084606
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
2109439
2109363
-
Met
CAT
-
¡û
>C191095087
CP032825
Campylobacterota
Aliarcobacter cryaerophilus D2610 [CP032825]
1571405
1571481
+
Met
CAT
-
¡û
>C191095091
CP032825
Campylobacterota
Aliarcobacter cryaerophilus D2610 [CP032825]
1571822
1571898
+
Met
CAT
-
¡û
>C191147091
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
1293510
1293586
+
Met
CAT
-
¡û
>C191147118
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
901393
901317
-
Met
CAT
-
¡û
>C191149067
CP036246
Campylobacterota
Arcobacter porcinus CCUG 56899 [CP036246]
1005669
1005745
+
Met
CAT
-
¡û
>C191149072
CP036246
Campylobacterota
Arcobacter porcinus CCUG 56899 [CP036246]
1351486
1351562
+
Met
CAT
-
¡û
>C191178274
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
1835453
1835529
+
Met
CAT
-
¡û
>C191178297
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
1349113
1349037
-
Met
CAT
-
¡û
>C141005624
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
1183755
1183831
+
Met
CAT
[Ensembl]
¡û
>C141005635
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
1757067
1757143
+
Met
CAT
[Ensembl]
¡û
>W1910810922
MUXF01000014
Campylobacterota
Arcobacter lacus RW43-9 [MUXF]
83828
83904
+
Met
CAT
[ENA]
¡û
>W1910810927
MUXF01000015
Campylobacterota
Arcobacter lacus RW43-9 [MUXF]
21178
21102
-
Met
CAT
[ENA]
¡û
>W1911200219
NREO01000009
Campylobacterota
Arcobacter suis CECT7833 [NREO]
129907
129831
-
Met
CAT
[ENA]
¡û
>W1911200240
NREO01000021
Campylobacterota
Arcobacter suis CECT7833 [NREO]
2005
1929
-
Met
CAT
[ENA]
¡û
>W1911424331
NXGC01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 29976 [NXGC]
530244
530168
-
Met
CAT
[ENA]
¡û
>W1911424386
NXGD01000007
Campylobacterota
Aliarcobacter cryaerophilus LMG 10229 [NXGD]
57981
57905
-
Met
CAT
[ENA]
¡û
>W1911424390
NXGD01000007
Campylobacterota
Aliarcobacter cryaerophilus LMG 10229 [NXGD]
51724
51648
-
Met
CAT
[ENA]
¡û
>W1911424409
NXGE01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 10210 [NXGE]
255608
255684
+
Met
CAT
[ENA]
¡û
>W1911426331
NXIG01000008
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
120100
120024
-
Met
CAT
[ENA]
¡û
>W1911426378
NXIH01000013
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
44687
44763
+
Met
CAT
[ENA]
¡û
>W1911426442
NXII01000025
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
24723
24799
+
Met
CAT
[ENA]
¡û
>W1911426447
NXII01000027
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
3607
3683
+
Met
CAT
[ENA]
¡û
>W1911426478
NXIJ01000025
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
49137
49213
+
Met
CAT
[ENA]
¡û
>W1911426487
NXIJ01000029
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
3561
3637
+
Met
CAT
[ENA]
¡û
>W1911576065
PDJS01000007
Campylobacterota
Aliarcobacter trophiarum CECT 7650 [PDJS]
17685
17761
+
Met
CAT
[ENA]
¡û
>W1911576420
PDJZ01000016
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
2932
2856
-
Met
CAT
[ENA]
¡û
>W1911576425
PDJZ01000018
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
3570
3646
+
Met
CAT
[ENA]
¡û
>W1911576442
PDKB01000003
Campylobacterota
Aliarcobacter vitoriensis CECT 9230 [PDKB]
122823
122747
-
Met
CAT
[ENA]
¡û
>W1911576544
PDKD01000006
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [PDKD]
68581
68505
-
Met
CAT
[ENA]
¡û
>W1911576765
PDKI01000009
Campylobacterota
Arcobacter sp. CECT 9188 [PDKI]
39928
39852
-
Met
CAT
[ENA]
¡û
>W1911746023
QVQX01000002
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
3144
3220
+
Met
CAT
[ENA]
¡û
>W1911746051
QVQX01000009
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
99788
99864
+
Met
CAT
[ENA]
¡û
>W1911775161
QXMK01000003
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
3102
3178
+
Met
CAT
[ENA]
¡û
>W1911775186
QXMK01000012
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
581
505
-
Met
CAT
[ENA]
¡û
>W1911775367
QXNB01000011
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
3035
3111
+
Met
CAT
[ENA]
¡û
>W1911775374
QXNB01000014
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
77718
77794
+
Met
CAT
[ENA]
¡û
>W1810058590
PDKA01000005
Campylobacterota
Arcobacter sp. FW59 [PDKA]
49153
49229
+
Met
CAT
[ENA]
¡û
>C11100367
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1177517
1177593
+
Met
CAT
[Ensembl]
¡û
>C11100378
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1759865
1759941
+
Met
CAT
[Ensembl]
¡û
>C11101043
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
1580567
1580643
+
Met
CAT
[Ensembl]
¡û
>C11101068
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
2385116
2385040
-
Met
CAT
[Ensembl]
¡û
>W1510763024
JAIW01000049
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
6
82
+
Met
CAT
[ENA]
¡û
>W11143294
AEPT01000030
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
1639
1715
+
Met
CAT
[ENA]
¡û
>W11143307
AEPT01000051
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
2936
3012
+
Met
CAT
[ENA]
¡û
>W11167763
AFNL01000023
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
70941
71017
+
Met
CAT
[ENA]
¡û
>W11167768
AFNL01000031
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
2986
3062
+
Met
CAT
[ENA]
¡û
>W1610584466
LCSK01000004
Campylobacterota
Arcobacter porcinus [LCSK]
164044
164120
+
Met
CAT
[ENA]
¡û
>W1610584469
LCSK01000007
Campylobacterota
Arcobacter porcinus [LCSK]
92344
92420
+
Met
CAT
[ENA]
¡û
>W1610584478
LCSL01000001
Campylobacterota
Arcobacter porcinus [LCSL]
177101
177025
-
Met
CAT
[ENA]
¡û
>W1610584514
LCSL01000007
Campylobacterota
Arcobacter porcinus [LCSL]
70738
70814
+
Met
CAT
[ENA]
¡û
>W1610584903
LCUH01000002
Campylobacterota
Aliarcobacter thereius [LCUH]
119418
119494
+
Met
CAT
[ENA]
¡û
>W1610584921
LCUH01000006
Campylobacterota
Aliarcobacter thereius [LCUH]
81275
81351
+
Met
CAT
[ENA]
¡û
>W1610584959
LCUI01000004
Campylobacterota
Arcobacter porcinus [LCUI]
128182
128106
-
Met
CAT
[ENA]
¡û
>W1610584963
LCUI01000005
Campylobacterota
Arcobacter porcinus [LCUI]
79302
79226
-
Met
CAT
[ENA]
¡û
>W1610585007
LCUJ01000003
Campylobacterota
Aliarcobacter thereius [LCUJ]
113027
113103
+
Met
CAT
[ENA]
¡û
>W1610585014
LCUJ01000008
Campylobacterota
Aliarcobacter thereius [LCUJ]
23096
23020
-
Met
CAT
[ENA]
¡û
>W1610585052
LCUK01000003
Campylobacterota
Aliarcobacter thereius [LCUK]
217442
217366
-
Met
CAT
[ENA]
¡û
>W1610585055
LCUK01000005
Campylobacterota
Aliarcobacter thereius [LCUK]
132330
132406
+
Met
CAT
[ENA]
¡û
>W1610586356
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
588522
588598
+
Met
CAT
[ENA]
¡û
>W1610586379
LDIR01000004
Campylobacterota
Arcobacter porcinus [LDIR]
71970
71894
-
Met
CAT
[ENA]
¡û
>W1610586422
LDIS01000003
Campylobacterota
Aliarcobacter thereius [LDIS]
214421
214345
-
Met
CAT
[ENA]
¡û
>W1610586427
LDIS01000004
Campylobacterota
Aliarcobacter thereius [LDIS]
177851
177927
+
Met
CAT
[ENA]
¡û
>W1610699357
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
1460179
1460255
+
Met
CAT
[ENA]
¡û
>W1610699363
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
1068062
1067986
-
Met
CAT
[ENA]
¡û
>W1610896388
LRUS01000034
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
10
86
+
Met
CAT
[ENA]
¡û
>W1610896484
LRUV01000041
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
32657
32581
-
Met
CAT
[ENA]
¡û
>W1710703683
LCSK01000004
Campylobacterota
Arcobacter porcinus [LCSK]
164044
164120
+
Met
CAT
[ENA]
¡û
>W1710703686
LCSK01000007
Campylobacterota
Arcobacter porcinus [LCSK]
92344
92420
+
Met
CAT
[ENA]
¡û
>W1710703695
LCSL01000001
Campylobacterota
Arcobacter porcinus [LCSL]
177101
177025
-
Met
CAT
[ENA]
¡û
>W1710703731
LCSL01000007
Campylobacterota
Arcobacter porcinus [LCSL]
70738
70814
+
Met
CAT
[ENA]
¡û
>W1710704094
LCUH01000002
Campylobacterota
Aliarcobacter thereius [LCUH]
119418
119494
+
Met
CAT
[ENA]
¡û
>W1710704112
LCUH01000006
Campylobacterota
Aliarcobacter thereius [LCUH]
81275
81351
+
Met
CAT
[ENA]
¡û
>W1710704150
LCUI01000004
Campylobacterota
Arcobacter porcinus [LCUI]
128182
128106
-
Met
CAT
[ENA]
¡û
>W1710704154
LCUI01000005
Campylobacterota
Arcobacter porcinus [LCUI]
79302
79226
-
Met
CAT
[ENA]
¡û
>W1710704198
LCUJ01000003
Campylobacterota
Aliarcobacter thereius [LCUJ]
113027
113103
+
Met
CAT
[ENA]
¡û
>W1710704205
LCUJ01000008
Campylobacterota
Aliarcobacter thereius [LCUJ]
23096
23020
-
Met
CAT
[ENA]
¡û
>W1710704243
LCUK01000003
Campylobacterota
Aliarcobacter thereius [LCUK]
217442
217366
-
Met
CAT
[ENA]
¡û
>W1710704246
LCUK01000005
Campylobacterota
Aliarcobacter thereius [LCUK]
132330
132406
+
Met
CAT
[ENA]
¡û
>W1710705486
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
588522
588598
+
Met
CAT
[ENA]
¡û
>W1710705509
LDIR01000004
Campylobacterota
Arcobacter porcinus [LDIR]
71970
71894
-
Met
CAT
[ENA]
¡û
>W1710705552
LDIS01000003
Campylobacterota
Aliarcobacter thereius [LDIS]
214421
214345
-
Met
CAT
[ENA]
¡û
>W1710705557
LDIS01000004
Campylobacterota
Aliarcobacter thereius [LDIS]
177851
177927
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK