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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289692 (53 seq.)
>W1710885900
LMXN01000004
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
1014
1089
+
Lys
TTT
[ENA]
¡û
>W1710885903
LMXN01000004
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
1399
1474
+
Lys
TTT
[ENA]
¡û
>W131053386
AMZY02000017
Bacteroidota
Mariniradius saccharolyticus AK6 [AMZY]
99644
99571
-
Lys
TTT
[ENA]
¡û
>W131053393
AMZY02000028
Bacteroidota
Mariniradius saccharolyticus AK6 [AMZY]
84
9
-
Lys
TTT
[ENA]
¡û
>W131167752
ARDN01000002
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
56970
57045
+
Lys
TTT
[ENA]
¡û
>W131167755
ARDN01000002
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
57349
57422
+
Lys
TTT
[ENA]
¡û
>W131167756
ARDN01000002
Bacteroidota
Echinicola pacifica DSM 19836 [ARDN]
57592
57667
+
Lys
TTT
[ENA]
¡û
>w023317
AAXU01000003
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
315665
315740
+
Lys
TTT
[ENA]
¡û
>w023314
AAXU01000003
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
315130
315207
+
Lys
TTT
[ENA]
¡û
>WENV180259319
OBEQ011091194
[OBEQ] groundwater metagenome; groundwater
1416
1489
+
Lys
TTT
[ENA]
¢þ
>WENV180594148
OCOY01063472
[OCOY] marine metagenome; ENVO:00002010
275
350
+
Lys
TTT
[ENA]
¢þ
>WENV183726758
PJTO01000132
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
22755
22682
-
Lys
TTT
[ENA]
¢þ
>WENV183726759
PJTO01000132
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
276
203
-
Lys
TTT
[ENA]
¢þ
>WENV183728593
PJTQ01000166
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
22755
22682
-
Lys
TTT
[ENA]
¢þ
>WENV183728594
PJTQ01000166
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
276
203
-
Lys
TTT
[ENA]
¢þ
>WENV183732408
PJTX01000124
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
26460
26533
+
Lys
TTT
[ENA]
¢þ
>WENV183732417
PJTX01000160
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
74
1
-
Lys
TTT
[ENA]
¢þ
>WENV183732428
PJTX01000229
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
11483
11410
-
Lys
TTT
[ENA]
¢þ
>WENV183732604
PJTX01003296
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
50
123
+
Lys
TTT
[ENA]
¢þ
>WENV183737273
PJUD01002414
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
5701
5774
+
Lys
TTT
[ENA]
¢þ
>WENV183739960
PJUF01000101
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
22755
22682
-
Lys
TTT
[ENA]
¢þ
>WENV183739961
PJUF01000101
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
276
203
-
Lys
TTT
[ENA]
¢þ
>WENV170574428
FLYM01037080
[FLYM] hot springs metagenome; Sediment
616
543
-
Lys
TTT
[ENA]
¢þ
>WENV170574431
FLYM01037080
[FLYM] hot springs metagenome; Sediment
182
107
-
Lys
TTT
[ENA]
¢þ
>C181179085
CP029480
Bacteroidota
Arcticibacterium luteifluviistationis SM1504 [CP029480]
313573
313500
-
Lys
TTT
-
¡û
>C181187343
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
3910737
3910810
+
Lys
TTT
-
¡û
>C181187346
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
3911488
3911561
+
Lys
TTT
-
¡û
>C191175186
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
2076641
2076714
+
Lys
TTT
-
¡û
>C191175189
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
2077013
2077086
+
Lys
TTT
-
¡û
>C191189161
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
2220045
2220118
+
Lys
TTT
-
¡û
>C191189164
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
2220513
2220586
+
Lys
TTT
-
¡û
>W1910548311
FZOK01000012
Bacteroidota
Belliella buryatensis 5C [FZOK]
144523
144450
-
Lys
TTT
[ENA]
¡û
>W1910548314
FZOK01000012
Bacteroidota
Belliella buryatensis 5C [FZOK]
144089
144016
-
Lys
TTT
[ENA]
¡û
>W1910584206
JXSZ01000005
Bacteroidota
Jiulongibacter sediminis JN14-9 [JXSZ]
698187
698114
-
Lys
TTT
[ENA]
¡û
>W1810531974
QCXY01000002
Bacteroidota
Pleomorphovibrio marinus SW125 [QCXY]
559295
559222
-
Lys
TTT
[ENA]
¡û
>W1810693485
QLLK01000016
Bacteroidota
Algoriphagus yeomjeoni DSM 23446 [QLLK]
70
143
+
Lys
TTT
[ENA]
¡û
>W1810789241
QRGB01000001
Bacteroidota
Pedobacter indicus SM1810 [QRGB]
3290054
3289981
-
Lys
TTT
[ENA]
¡û
>C121010200
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
4160632
4160559
-
Lys
TTT
[Ensembl]
¡û
>C121010203
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
4160121
4160046
-
Lys
TTT
[Ensembl]
¡û
>C161003246
CP004371
Bacteroidota
Flammeovirgaceae bacterium 311 [CP004371]
4860601
4860676
+
Lys
TTT
[Ensembl]
¡û
>C131003293
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
2167375
2167448
+
Lys
TTT
[Ensembl]
¡û
>C131003296
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
2167777
2167850
+
Lys
TTT
[Ensembl]
¡û
>W1610617453
LGTQ01000005
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
698187
698112
-
Lys
TTT
[ENA]
¡û
>W1610747826
LMXN01000004
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
1014
1089
+
Lys
TTT
[ENA]
¡û
>W1610747829
LMXN01000004
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
1399
1474
+
Lys
TTT
[ENA]
¡û
>W1710520385
FNFO01000005
Bacteroidota
Catalinimonas alkaloidigena [FNFO]
4607
4532
-
Lys
TTT
[ENA]
¡û
>W1710577993
FPBF01000009
Bacteroidota
Algoriphagus locisalis [FPBF]
70
145
+
Lys
TTT
[ENA]
¡û
>W1710577996
FPBF01000009
Bacteroidota
Algoriphagus locisalis [FPBF]
541
616
+
Lys
TTT
[ENA]
¡û
>W1710594216
FSRC01000001
Bacteroidota
Algoriphagus halophilus [FSRC]
40608
40535
-
Lys
TTT
[ENA]
¡û
>W1710594219
FSRC01000001
Bacteroidota
Algoriphagus halophilus [FSRC]
40204
40131
-
Lys
TTT
[ENA]
¡û
>W1710599294
FTOP01000010
Bacteroidota
Belliella pelovolcani [FTOP]
78362
78289
-
Lys
TTT
[ENA]
¡û
>W1710599297
FTOP01000010
Bacteroidota
Belliella pelovolcani [FTOP]
77928
77853
-
Lys
TTT
[ENA]
¡û
>W1710743040
LGTQ01000005
Bacteroidota
Jiulongibacter sediminis JN14-9 [LGTQ]
698187
698112
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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