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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.289945 (61 seq.)
>W1710862446
LMEJ01000014
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
406789
406864
+
Glu
TTC
[ENA]
¡û
>W1710863942
LMFM01000018
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
406791
406866
+
Glu
TTC
[ENA]
¡û
>W1710867175
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
489594
489519
-
Glu
TTC
[ENA]
¡û
>W1710867275
LMID01000001
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
911618
911543
-
Glu
TTC
[ENA]
¡û
>W1710867415
LMIG01000004
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
1734647
1734722
+
Glu
TTC
[ENA]
¡û
>W1710912615
LNRT01000007
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
225377
225452
+
Glu
TTC
[ENA]
¡û
>W1710913045
LNSD01000002
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
466446
466371
-
Glu
TTC
[ENA]
¡û
>W1711603444
MOLY01000030
Alphaproteobacteria
Sphingomonas montana W16RD [MOLY]
7086
7161
+
Glu
TTC
[ENA]
¡û
>C171075861
CP018221
Alphaproteobacteria
Tardibacter chloracetimidivorans JJ-A5 [CP018221]
99765
99840
+
Glu
TTC
-
¡û
>C171094572
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
3463741
3463666
-
Glu
TTC
-
¡û
>C171117084
CP021181
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [CP021181]
276142
276067
-
Glu
TTC
-
¡û
>C171128419
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
3945218
3945293
+
Glu
TTC
-
¡û
>W131098365
AORL01000019
Alphaproteobacteria
Sphingomonas sp. PR090111-T3T-6A [AORL]
130926
131001
+
Glu
TTC
[ENA]
¡û
>W131196604
ASTM01000152
Alphaproteobacteria
Sphingomonas sp. YL-JM2C [ASTM]
3167
3092
-
Glu
TTC
[ENA]
¡û
>C024971
CP000699
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [CP000699]
5207447
5207522
+
Glu
TTC
[Ensembl]
¡û
>WENV180020085
FTCV01001616
[FTCV] metagenome; soil
2850
2775
-
Glu
TTC
[ENA]
¢þ
>WENV180020380
FTCZ01002410
[FTCZ] metagenome; soil
2945
3020
+
Glu
TTC
[ENA]
¢þ
>WENV180020612
FTCZ01007279
[FTCZ] metagenome; soil
6549
6474
-
Glu
TTC
[ENA]
¢þ
>WENV180026354
FTIT01002117
[FTIT] metagenome; soil
6147
6222
+
Glu
TTC
[ENA]
¢þ
>WENV180039497
LLBY010081885
[LLBY] soil metagenome; soil from tomato rhizosphere
8300
8225
-
Glu
TTC
[ENA]
¢þ
>WENV180040864
LLBZ010018603
[LLBZ] soil metagenome; soil from tomato rhizosphere
8909
8984
+
Glu
TTC
[ENA]
¢þ
>WENV180690292
OCZS010002196
[OCZS] soil metagenome; soil
4131
4056
-
Glu
TTC
[ENA]
¢þ
>WENV181167306
OEIU01019046
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2014
1939
-
Glu
TTC
[ENA]
¢þ
>WENV181184404
OEKC01000045
[OEKC] metagenome; 1998
1723
1648
-
Glu
TTC
[ENA]
¢þ
>W141223059
BACX01000741
Alphaproteobacteria
Sphingomonas-like bacterium B12 [BACX]
3607
3682
+
Glu
TTC
[ENA]
¡û
>WENV183748651
PPFU01064686
[PPFU] hypolithon metagenome; Antarctic Hypolithon
76
1
-
Glu
TTC
[ENA]
¢þ
>WENV183749776
PPFU01212176
[PPFU] hypolithon metagenome; Antarctic Hypolithon
139
64
-
Glu
TTC
[ENA]
¢þ
>WENV170713815
LNFM01043103
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2785
2858
+
Glu
CTC
[ENA]
¢þ
>WENV170761389
LUMV01000182
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
19367
19442
+
Glu
TTC
[ENA]
¢þ
>C181081618
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
3274646
3274571
-
Glu
TTC
-
¡û
>C181133071
CP026381
Alphaproteobacteria
Sphingopyxis sp. MG [CP026381]
3589569
3589644
+
Glu
TTC
-
¡û
>C191004240
AP018711
Alphaproteobacteria
Sphingosinicella microcystinivorans B9 [AP018711]
2062295
2062370
+
Glu
TTC
-
¡û
>C191144149
CP035501
Alphaproteobacteria
Sphingosinicella sp. BN140058 [CP035501]
3630797
3630872
+
Glu
TTC
-
¡û
>W141564489
JIAU01000008
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
56577
56502
-
Glu
TTC
[ENA]
¡û
>W09106507
AAVK01000003
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [AAVK]
66010
66085
+
Glu
TTC
[ENA]
¡û
>W141713953
JMUB01000041
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [JMUB]
32038
32113
+
Glu
TTC
[ENA]
¡û
>W141819211
JQMC01000060
Alphaproteobacteria
Rhizorhabdus wittichii [JQMC]
6678
6753
+
Glu
TTC
[ENA]
¡û
>W1910744403
MIAM01000058
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 [MIAM]
7810
7735
-
Glu
TTC
[ENA]
¡û
>W1911391058
NWBU01000009
Alphaproteobacteria
Sphingomonas oleivorans FW-11 [NWBU]
233340
233265
-
Glu
TTC
[ENA]
¡û
>W1911411161
NWUF01000020
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
26440
26365
-
Glu
TTC
[ENA]
¡û
>W1810390297
PXYI01000006
Alphaproteobacteria
Sphingomonas deserti GL-C-18 [PXYI]
304516
304591
+
Glu
TTC
[ENA]
¡û
>W1810538556
QDFY01000010
Alphaproteobacteria
Sphingosinicella terrae KCTC 52780 [QDFY]
82273
82198
-
Glu
TTC
[ENA]
¡û
>W1810579381
QEQM01000001
Alphaproteobacteria
Sphingomonas sp. URHD0007 [QEQM]
1022144
1022219
+
Glu
TTC
[ENA]
¡û
>W1810586261
QFFF01000001
Alphaproteobacteria
Sphingosinicella humi QZX222 [QFFF]
1959778
1959853
+
Glu
TTC
[ENA]
¡û
>SRA1015243
SRR023845.516779
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
205
279
+
Glu
TTC
[SRA]
>W1511581117
LARW01000090
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
29939
29864
-
Glu
TTC
[ENA]
¡û
>W1511633052
LDES01000056
Alphaproteobacteria
Sphingomonas sp. Y57 [LDES]
63654
63579
-
Glu
TTC
[ENA]
¡û
>C161055631
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
1547092
1547017
-
Glu
TTC
[Ensembl]
¡û
>W121034451
AHKO01000714
Alphaproteobacteria
Rhizorhabdus wittichii DP58 [AHKO]
2397
2322
-
Glu
TTC
[ENA]
¡û
>W1610724792
LMEJ01000014
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
406789
406864
+
Glu
TTC
[ENA]
¡û
>W1610726288
LMFM01000018
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
406791
406866
+
Glu
TTC
[ENA]
¡û
>W1610729521
LMIB01000001
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
489594
489519
-
Glu
TTC
[ENA]
¡û
>W1610729621
LMID01000001
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
911618
911543
-
Glu
TTC
[ENA]
¡û
>W1610729761
LMIG01000004
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
1734647
1734722
+
Glu
TTC
[ENA]
¡û
>W1610770889
LNRR01000007
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
225374
225449
+
Glu
TTC
[ENA]
¡û
>W1610770974
LNRT01000007
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
225377
225452
+
Glu
TTC
[ENA]
¡û
>W1610771363
LNSC01000010
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
26352
26277
-
Glu
TTC
[ENA]
¡û
>W1610771404
LNSD01000002
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
466446
466371
-
Glu
TTC
[ENA]
¡û
>W1710512362
FMZJ01000001
Alphaproteobacteria
Sphingomonas sp. YR710 [FMZJ]
16355
16430
+
Glu
TTC
[ENA]
¡û
>W1710602724
FUYM01000001
Alphaproteobacteria
Rhizorhabdus histidinilytica [FUYM]
119130
119205
+
Glu
TTC
[ENA]
¡û
>W1710743486
LGVA01000046
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 [LGVA]
26365
26290
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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