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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290074 (29 seq.)
>W1710892454
LNDT01000032
Bdellovibrionota
Bdellovibrionales bacterium Ga0074137 [LNDT]
33982
34057
+
Thr
TGT
[ENA]
¡û
>W1710892740
LNEB01000013
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
72603
72528
-
Thr
TGT
[ENA]
¡û
>W1711124479
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
552567
552492
-
Thr
TGT
[ENA]
¡û
>W1711124515
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
469987
469912
-
Thr
TGT
[ENA]
¡û
>W1711124549
LUKF01000016
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
293744
293669
-
Thr
TGT
[ENA]
¡û
>W1711394095
MEPT01000118
Bdellovibrionota
Bdellovibrionales bacterium RBG_16_40_8 [MEPT]
53028
52953
-
Thr
TGT
[ENA]
¡û
>W1712010647
NELQ01000002
Bdellovibrionota
Bdellovibrio sp. SKB1291214 [NELQ]
1536413
1536338
-
Thr
TGT
[ENA]
¡û
>C001976
BX842601
Bdellovibrionota
Bdellovibrio bacteriovorus [BX842601]
2892139
2892064
-
Thr
TGT
[Ensembl]
¡û
>WENV181172917
OEIV011074156
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
65
140
+
Thr
TGT
[ENA]
¢þ
>WENV181379183
OFRC01047849
[OFRC] wastewater metagenome; Exp Tend CN 10WW
359
284
-
Thr
TGT
[ENA]
¢þ
>WENV181839847
OGVO01017180
[OGVO] freshwater metagenome; freshwater
94
169
+
Thr
TGT
[ENA]
¢þ
>WENV170577340
FRDC01004650
[FRDC] freshwater metagenome; water
46603
46528
-
Thr
TGT
[ENA]
¢þ
>WENV170709187
LNFM01000171
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
87906
87981
+
Thr
TGT
[ENA]
¢þ
>WENV170709362
LNFM01000286
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
33978
34053
+
Thr
TGT
[ENA]
¢þ
>WENV170714908
LNFM01114221
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1134
1209
+
Thr
TGT
[ENA]
¢þ
>C181047761
CP020946
Bdellovibrionota
Bdellovibrio bacteriovorus SSB218315 [CP020946]
887849
887924
+
Thr
TGT
-
¡û
>W1910698854
MEPU01000004
Bdellovibrionota
Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29 [MEPU]
480377
480302
-
Thr
TGT
[ENA]
¡û
>W1910698893
MEPV01000012
Bdellovibrionota
Bdellovibrionales bacterium RIFCSPHIGHO2_02_FULL_40_15 [MEPV]
182319
182244
-
Thr
TGT
[ENA]
¡û
>C151003365
CP002190
Bdellovibrionota
Bdellovibrio bacteriovorus W [CP002190]
2328058
2327983
-
Thr
TGT
[Ensembl]
¡û
>C151031151
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
46514
46439
-
Thr
TGT
[Ensembl]
¡û
>C151087490
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
2795659
2795584
-
Thr
TGT
-
¡û
>W1511399682
JTEV01000037
Bdellovibrionota
Bdellovibrio sp. ArHS [JTEV]
17470
17545
+
Thr
TGT
[ENA]
¡û
>C131001663
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
3078223
3078148
-
Thr
TGT
[Ensembl]
¡û
>C131004044
CP003537
Bdellovibrionota
Pseudobdellovibrio exovorus JSS [CP003537]
1946467
1946392
-
Thr
TGT
[Ensembl]
¡û
>W1610752720
LNDT01000032
Bdellovibrionota
Bdellovibrionales bacterium Ga0074137 [LNDT]
33982
34057
+
Thr
TGT
[ENA]
¡û
>W1610753006
LNEB01000013
Bdellovibrionota
Bdellovibrionales bacterium Ga0074139 [LNEB]
72603
72528
-
Thr
TGT
[ENA]
¡û
>W1610935419
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
552567
552492
-
Thr
TGT
[ENA]
¡û
>W1610935455
LUKE01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKE]
469987
469912
-
Thr
TGT
[ENA]
¡û
>W1610935489
LUKF01000016
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
293744
293669
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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