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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290428 (57 seq.)
>W1711029282
LRFC01000012
Bacillota
Fictibacillus phosphorivorans [LRFC]
660
735
+
Phe
GAA
[ENA]
¡û
>W1711029294
LRFC01000023
Bacillota
Fictibacillus phosphorivorans [LRFC]
734648
734573
-
Phe
GAA
[ENA]
¡û
>W1711029316
LRFC01000038
Bacillota
Fictibacillus phosphorivorans [LRFC]
35523
35598
+
Phe
GAA
[ENA]
¡û
>W1711171766
LWBL02000033
Bacillota
Bacillus marinisedimentorum NC2-31 [LWBL]
59695
59767
+
Phe
GAA
[ENA]
¡û
>W1711171794
LWBL02000065
Bacillota
Bacillus marinisedimentorum NC2-31 [LWBL]
50291
50216
-
Phe
GAA
[ENA]
¡û
>W1711171825
LWBL02000081
Bacillota
Bacillus marinisedimentorum NC2-31 [LWBL]
9293
9218
-
Phe
GAA
[ENA]
¡û
>W131220247
ATZF01000010
Bacillota
Shimazuella kribbensis DSM 45090 [ATZF]
134525
134450
-
Phe
GAA
[ENA]
¡û
>W131245101
CARA01000068
Bacillota
Schnuerera ultunensis Esp [CARA]
15466
15541
+
Phe
GAA
[ENA]
¡û
>W141207456
AZNU01000008
Bacillota
Thermicanus aegyptius DSM 12793 [AZNU]
429409
429334
-
Phe
GAA
[ENA]
¡û
>W141220207
AZXQ01000004
Bacillota
Cohnella panacarvi Gsoil 349 [AZXQ]
1164082
1164007
-
Phe
GAA
[ENA]
¡û
>W141220223
AZXQ01000005
Bacillota
Cohnella panacarvi Gsoil 349 [AZXQ]
813569
813494
-
Phe
GAA
[ENA]
¡û
>WENV183726600
PJTO01000029
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
269826
269751
-
Phe
GAA
[ENA]
¢þ
>WENV183727082
PJTO01003832
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
1968
1893
-
Phe
GAA
[ENA]
¢þ
>WENV183737071
PJUD01000338
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
28060
27985
-
Phe
GAA
[ENA]
¢þ
>WENV183737110
PJUD01000495
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
18808
18733
-
Phe
GAA
[ENA]
¢þ
>WENV183741351
PJUF01095152
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
109
34
-
Phe
GAA
[ENA]
¢þ
>C191007657
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
586284
586359
+
Phe
GAA
-
¡û
>C191007690
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
5173658
5173583
-
Phe
GAA
-
¡û
>C191007705
AP019400
Bacillota
Cohnella abietis HS21 [AP019400]
5160583
5160508
-
Phe
GAA
-
¡û
>W1910827135
MWSG01000004
Bacillota
Cohnella sp. CIP 111063 [MWSG]
518
593
+
Phe
GAA
[ENA]
¡û
>W1910827173
MWSG01000022
Bacillota
Cohnella sp. CIP 111063 [MWSG]
157013
156938
-
Phe
GAA
[ENA]
¡û
>W1911680832
QJKL01000001
Bacillota
Fictibacillus sp. S7 [QJKL]
367204
367279
+
Phe
GAA
[ENA]
¡û
>W1911680837
QJKL01000001
Bacillota
Fictibacillus sp. S7 [QJKL]
3152601
3152676
+
Phe
GAA
[ENA]
¡û
>W1911680882
QJKL01000001
Bacillota
Fictibacillus sp. S7 [QJKL]
2349196
2349121
-
Phe
GAA
[ENA]
¡û
>W1911771074
QXJM01000039
Bacillota
Cohnella faecalis K2E09-144 [QXJM]
1230363
1230438
+
Phe
GAA
[ENA]
¡û
>W1911771097
QXJM01000040
Bacillota
Cohnella faecalis K2E09-144 [QXJM]
44541
44466
-
Phe
GAA
[ENA]
¡û
>W1810062562
PDOF01000001
Bacillota
Alteribacter lacisalsi YSP-3 [PDOF]
2262435
2262360
-
Phe
GAA
[ENA]
¡û
>W1810062580
PDOF01000003
Bacillota
Alteribacter lacisalsi YSP-3 [PDOF]
675432
675357
-
Phe
GAA
[ENA]
¡û
>W1810367658
PVYW01000004
Bacillota
Cohnella sp. SGD-V74 [PVYW]
518
593
+
Phe
GAA
[ENA]
¡û
>W1810367696
PVYW01000022
Bacillota
Cohnella sp. SGD-V74 [PVYW]
157013
156938
-
Phe
GAA
[ENA]
¡û
>W1810725278
QOCW01000004
Bacillota
Bacillus taeanensis BH030017 [QOCW]
130829
130905
+
Phe
GAA
[ENA]
¡û
>W1810725287
QOCW01000011
Bacillota
Bacillus taeanensis BH030017 [QOCW]
128136
128061
-
Phe
GAA
[ENA]
¡û
>W1810725299
QOCW01000013
Bacillota
Bacillus taeanensis BH030017 [QOCW]
77251
77176
-
Phe
GAA
[ENA]
¡û
>W1810725336
QOCW01000033
Bacillota
Bacillus taeanensis BH030017 [QOCW]
44715
44640
-
Phe
GAA
[ENA]
¡û
>W1810787741
QRDY01000011
Bacillota
Cohnella lupini CECT 8236 [QRDY]
175341
175266
-
Phe
GAA
[ENA]
¡û
>W1810787757
QRDY01000018
Bacillota
Cohnella lupini CECT 8236 [QRDY]
107320
107245
-
Phe
GAA
[ENA]
¡û
>W1810787823
QRDZ01000030
Bacillota
Cohnella phaseoli CECT 7287 [QRDZ]
722
797
+
Phe
GAA
[ENA]
¡û
>W1810787839
QRDZ01000036
Bacillota
Cohnella phaseoli CECT 7287 [QRDZ]
100489
100414
-
Phe
GAA
[ENA]
¡û
>W1511499717
JXAL01000001
Bacillota
Cohnella kolymensis VKM B-2846 [JXAL]
764329
764254
-
Phe
GAA
[ENA]
¡û
>C161086793
CP015378
Bacillota
Fictibacillus phosphorivorans G25-29 [CP015378]
567911
567986
+
Phe
GAA
[Ensembl]
¡û
>C161086809
CP015378
Bacillota
Fictibacillus phosphorivorans G25-29 [CP015378]
4191092
4191017
-
Phe
GAA
[Ensembl]
¡û
>C161086817
CP015378
Bacillota
Fictibacillus phosphorivorans G25-29 [CP015378]
2735408
2735333
-
Phe
GAA
[Ensembl]
¡û
>C161102925
CP016761
Bacillota
Fictibacillus arsenicus G25-54 [CP016761]
539507
539582
+
Phe
GAA
[Ensembl]
¡û
>C161102941
CP016761
Bacillota
Fictibacillus arsenicus G25-54 [CP016761]
4015501
4015426
-
Phe
GAA
[Ensembl]
¡û
>C161102949
CP016761
Bacillota
Fictibacillus arsenicus G25-54 [CP016761]
2499803
2499728
-
Phe
GAA
[Ensembl]
¡û
>W1610515174
FMAV01000001
Bacillota
Fictibacillus enclensis [FMAV]
558
633
+
Phe
GAA
[ENA]
¡û
>W1610515194
FMAV01000001
Bacillota
Fictibacillus enclensis [FMAV]
1907713
1907638
-
Phe
GAA
[ENA]
¡û
>W1610515202
FMAV01000003
Bacillota
Fictibacillus enclensis [FMAV]
34128
34203
+
Phe
GAA
[ENA]
¡û
>W1610586206
LDFV01000004
Bacillota
Fictibacillus arsenicus G25-54 [LDFV]
2727
2802
+
Phe
GAA
[ENA]
¡û
>W1610586249
LDFV01000014
Bacillota
Fictibacillus arsenicus G25-54 [LDFV]
187045
186970
-
Phe
GAA
[ENA]
¡û
>W1610586259
LDFV01000024
Bacillota
Fictibacillus arsenicus G25-54 [LDFV]
20540
20615
+
Phe
GAA
[ENA]
¡û
>W1610877550
LRFC01000012
Bacillota
Fictibacillus phosphorivorans [LRFC]
660
735
+
Phe
GAA
[ENA]
¡û
>W1610877562
LRFC01000023
Bacillota
Fictibacillus phosphorivorans [LRFC]
734648
734573
-
Phe
GAA
[ENA]
¡û
>W1610877584
LRFC01000038
Bacillota
Fictibacillus phosphorivorans [LRFC]
35523
35598
+
Phe
GAA
[ENA]
¡û
>W1710500864
FMAV01000001
Bacillota
Fictibacillus enclensis [FMAV]
558
633
+
Phe
GAA
[ENA]
¡û
>W1710500884
FMAV01000001
Bacillota
Fictibacillus enclensis [FMAV]
1907713
1907638
-
Phe
GAA
[ENA]
¡û
>W1710500892
FMAV01000003
Bacillota
Fictibacillus enclensis [FMAV]
34128
34203
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK