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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290455 (18 seq.)
>W1711272826
LZFP01000045
Bacteroidota
Maribacter hydrothermalis T28 [LZFP]
375466
375391
-
Lys
TTT
[ENA]
¡û
>C171083189
CP018760
Bacteroidota
Maribacter hydrothermalis T28 [CP018760]
3243163
3243088
-
Lys
TTT
-
¡û
>WENV182546551
OJBP01000157
[OJBP] seawater metagenome; Sea water
40619
40692
+
Lys
TTT
[ENA]
¡û
>WENV170672980
LAZR01003965
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
7636
7709
+
Lys
TTT
[ENA]
¡û
>C181175173
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
460000
460073
+
Lys
TTT
-
¡û
>C181175174
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
460199
460272
+
Lys
TTT
-
¡û
>W141562344
JHZC01000003
Bacteroidota
Maribacter antarcticus DSM 21422 [JHZC]
517755
517682
-
Lys
TTT
[ENA]
¡û
>W2011411410
RDRZ01000032
Bacteroidota
Flavobacteriaceae bacterium PRS1 [RDRZ]
7934
8007
+
Lys
TTT
[ENA]
¡û
>W2011413370
REFV01000005
Bacteroidota
Dokdonia sp. SH27 [REFV]
202791
202718
-
Lys
TTT
[ENA]
¡û
>W2011963576
VAUW01000049
Bacteroidota
Maribacter sp. ACAM166 [VAUW]
21422
21497
+
Lys
TTT
[ENA]
¡û
>W2011963577
VAUW01000049
Bacteroidota
Maribacter sp. ACAM166 [VAUW]
21591
21664
+
Lys
TTT
[ENA]
¡û
>W2012042277
VISD01000001
Bacteroidota
Dokdonia sp. Hel_I_63 [VISD]
3117661
3117734
+
Lys
TTT
[ENA]
¡û
>W2012042278
VISD01000001
Bacteroidota
Dokdonia sp. Hel_I_63 [VISD]
3117861
3117934
+
Lys
TTT
[ENA]
¡û
>C11111620
CP002528
Bacteroidota
Dokdonia sp. 4H-3-7-5 [CP002528]
2205768
2205695
-
Lys
TTT
[Ensembl]
¡û
>C11111621
CP002528
Bacteroidota
Dokdonia sp. 4H-3-7-5 [CP002528]
2205568
2205495
-
Lys
TTT
[Ensembl]
¡û
>W1511433243
JUHB01000001
Bacteroidota
Cellulophaga sp. Hel_I_12 [JUHB]
3763180
3763107
-
Lys
TTT
[ENA]
¡û
>W1611032175
LZFP01000045
Bacteroidota
Maribacter hydrothermalis T28 [LZFP]
375466
375391
-
Lys
TTT
[ENA]
¡û
>W1710513988
FNAO01000011
Bacteroidota
Pricia antarctica [FNAO]
18405
18478
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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