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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290480 (79 seq.)
>W1710877103
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76385
76460
+
Phe
GAA
[ENA]
¡û
>W1710877121
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
268
343
+
Phe
GAA
[ENA]
¡û
>W1710909379
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1002
1077
+
Phe
GAA
[ENA]
¡û
>W1711116961
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
293
368
+
Phe
GAA
[ENA]
¡û
>W1711116990
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774569
774494
-
Phe
GAA
[ENA]
¡û
>W1711256976
LYTG01000052
Bacillota
Exiguobacterium sp. SH31 [LYTG]
2528
2453
-
Phe
GAA
[ENA]
¡û
>W1711507268
MKXO01000001
Bacillota
Exiguobacterium aurantiacum [MKXO]
1157985
1157910
-
Phe
GAA
[ENA]
¡û
>W1711507308
MKXO01000020
Bacillota
Exiguobacterium aurantiacum [MKXO]
433
508
+
Phe
GAA
[ENA]
¡û
>W1711589643
MOEL01000005
Bacillota
Exiguobacterium sp. AT1b [MOEL]
775
850
+
Phe
GAA
[ENA]
¡û
>W1711632637
MPSZ01000001
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
612
687
+
Phe
GAA
[ENA]
¡û
>W1711632682
MPSZ01000023
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
813
738
-
Phe
GAA
[ENA]
¡û
>W1711713066
MTCT01000002
Bacillota
Exiguobacterium sp. HVEsp1 [MTCT]
49536
49461
-
Phe
GAA
[ENA]
¡û
>W1711713103
MTCT01000008
Bacillota
Exiguobacterium sp. HVEsp1 [MTCT]
1853
1928
+
Phe
GAA
[ENA]
¡û
>W1712017225
NESR01000001
Bacillota
Kurthia gibsonii [NESR]
492
567
+
Phe
GAA
[ENA]
¡û
>W1712017331
NESR01000042
Bacillota
Kurthia gibsonii [NESR]
878
803
-
Phe
GAA
[ENA]
¡û
>C171040518
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
461810
461885
+
Phe
GAA
-
¡û
>C171040553
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
1162482
1162557
+
Phe
GAA
-
¡û
>C171072093
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
34676
34751
+
Phe
GAA
-
¡û
>C171072134
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
723834
723909
+
Phe
GAA
-
¡û
>W131202757
ASXD01000105
Bacillota
Exiguobacterium sp. S17 [ASXD]
668
743
+
Phe
GAA
[ENA]
¡û
>W131205109
ATCL01000011
Bacillota
Exiguobacterium chiriqhucha RW2 [ATCL]
277
352
+
Phe
GAA
[ENA]
¡û
>W131205126
ATCL01000018
Bacillota
Exiguobacterium chiriqhucha RW2 [ATCL]
551
476
-
Phe
GAA
[ENA]
¡û
>W131241562
BARY01000009
Bacillota
Exiguobacterium sp. OS-77 [BARY]
928560
928485
-
Phe
GAA
[ENA]
¡û
>W08009420
ABPF01000072
Bacillota
Exiguobacterium sp. AT1b [ABPF]
2825
2753
-
Phe
GAA
[ENA]
¡û
>W141484753
JFYW01000001
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
1687721
1687646
-
Phe
GAA
[ENA]
¡û
>C191181514
CP040676
Bacillota
Exiguobacterium mexicanum A-EM [CP040676]
2073699
2073624
-
Phe
GAA
-
¡û
>W141563108
JHZT01000002
Bacillota
Exiguobacterium marinum DSM 16307 [JHZT]
266
341
+
Phe
GAA
[ENA]
¡û
>W141563141
JHZT01000003
Bacillota
Exiguobacterium marinum DSM 16307 [JHZT]
2042783
2042708
-
Phe
GAA
[ENA]
¡û
>W141620185
JJMW01000033
Bacillota
Exiguobacterium alkaliphilum 12·î1Æü [JJMW]
788
863
+
Phe
GAA
[ENA]
¡û
>W141620213
JJMW01000053
Bacillota
Exiguobacterium alkaliphilum 12·î1Æü [JJMW]
1017
942
-
Phe
GAA
[ENA]
¡û
>W141726031
JNAA01000040
Bacillota
Exiguobacterium sp. AB2 [JNAA]
817
742
-
Phe
GAA
[ENA]
¡û
>W141726054
JNAA01000089
Bacillota
Exiguobacterium sp. AB2 [JNAA]
678
753
+
Phe
GAA
[ENA]
¡û
>W141730794
JNIP01000001
Bacillota
Exiguobacterium chiriqhucha GIC31 [JNIP]
2912828
2912903
+
Phe
GAA
[ENA]
¡û
>W141730829
JNIP01000001
Bacillota
Exiguobacterium chiriqhucha GIC31 [JNIP]
2216902
2216827
-
Phe
GAA
[ENA]
¡û
>W141730844
JNIQ01000001
Bacillota
Exiguobacterium aurantiacum DSM 6208 [JNIQ]
514337
514412
+
Phe
GAA
[ENA]
¡û
>W141730878
JNIQ01000001
Bacillota
Exiguobacterium aurantiacum DSM 6208 [JNIQ]
2697269
2697194
-
Phe
GAA
[ENA]
¡û
>W141730914
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
282891
282966
+
Phe
GAA
[ENA]
¡û
>W141730931
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2754277
2754352
+
Phe
GAA
[ENA]
¡û
>W141807046
JPOD01000001
Bacillota
Exiguobacterium sp. NG55 [JPOD]
225618
225693
+
Phe
GAA
[ENA]
¡û
>W141807059
JPOD01000003
Bacillota
Exiguobacterium sp. NG55 [JPOD]
4555
4630
+
Phe
GAA
[ENA]
¡û
>W1910154934
BIMD01000073
Bacillota
Paenibacillus humicus NBRC 102415 [BIMD]
17593
17518
-
Phe
GAA
[ENA]
¡û
>C141009937
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
677706
677781
+
Phe
GAA
[Ensembl]
¡û
>C141009954
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
3163940
3164015
+
Phe
GAA
[Ensembl]
¡û
>C09106152
CP001615
Bacillota
Exiguobacterium sp. AT1b [CP001615]
2380965
2381040
+
Phe
GAA
[Ensembl]
¡û
>C09106168
CP001615
Bacillota
Exiguobacterium sp. AT1b [CP001615]
1662590
1662515
-
Phe
GAA
[Ensembl]
¡û
>W1810270870
PREZ01000002
Bacillota
Jeotgalibacillus proteolyticus 7·î22Æü [PREZ]
634593
634519
-
Phe
GAA
[ENA]
¡û
>SRA1004464
SRR006906.38445
metagenomic water samples (SRP000427)
110
35
-
Phe
GAA
[SRA]
>W1810823282
QSGS01000035
Bacillota
Exiguobacterium sp. AM39-5BH [QSGS]
602
677
+
Phe
GAA
[ENA]
¡û
>W1511325285
JQGI01000013
Bacillota
Exiguobacterium mexicanum HUD [JQGI]
524
599
+
Phe
GAA
[ENA]
¡û
>W1511325294
JQGI01000022
Bacillota
Exiguobacterium mexicanum HUD [JQGI]
234
309
+
Phe
GAA
[ENA]
¡û
>W1511403350
JTLB01000007
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
40676
40601
-
Phe
GAA
[ENA]
¡û
>W1511403387
JTLB01000042
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
898
823
-
Phe
GAA
[ENA]
¡û
>W1511403832
JTLL01000043
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
834
759
-
Phe
GAA
[ENA]
¡û
>W1511541228
JZEJ01000001
Bacillota
Paenibacillus sp. D9 [JZEJ]
3988168
3988243
+
Phe
GAA
[ENA]
¡û
>W1511638501
LDNY01000001
Bacillota
Exiguobacterium sp. JLM-2 [LDNY]
2092491
2092416
-
Phe
GAA
[ENA]
¡û
>W1511638516
LDNY01000002
Bacillota
Exiguobacterium sp. JLM-2 [LDNY]
341149
341224
+
Phe
GAA
[ENA]
¡û
>W1511686075
LFQN01000017
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
41118
41043
-
Phe
GAA
[ENA]
¡û
>W1511686116
LFQN01000053
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
185
260
+
Phe
GAA
[ENA]
¡û
>W1511699986
LGIW01000015
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
444
519
+
Phe
GAA
[ENA]
¡û
>W1610521255
JMEH01000011
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
966
1041
+
Phe
GAA
[ENA]
¡û
>W1610521271
JMEH01000019
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
1300
1225
-
Phe
GAA
[ENA]
¡û
>W1610589627
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
699
774
+
Phe
GAA
[ENA]
¡û
>W1610589641
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
832
757
-
Phe
GAA
[ENA]
¡û
>W1610589658
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
486
561
+
Phe
GAA
[ENA]
¡û
>W1610589700
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
185
260
+
Phe
GAA
[ENA]
¡û
>W1610739449
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76385
76460
+
Phe
GAA
[ENA]
¡û
>W1610739467
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
268
343
+
Phe
GAA
[ENA]
¡û
>W1610767738
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1002
1077
+
Phe
GAA
[ENA]
¡û
>W1610928320
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
293
368
+
Phe
GAA
[ENA]
¡û
>W1610928349
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774569
774494
-
Phe
GAA
[ENA]
¡û
>W1710511214
FMYN01000002
Bacillota
Exiguobacterium enclense [FMYN]
1002
1077
+
Phe
GAA
[ENA]
¡û
>W1710595452
FTLY01000005
Bacillota
Paenibacillus sp. RU4X [FTLY]
339087
339012
-
Phe
GAA
[ENA]
¡û
>W1710597350
FTND01000005
Bacillota
Paenibacillus sp. RU4T [FTND]
339087
339012
-
Phe
GAA
[ENA]
¡û
>W1710619735
JMEH01000011
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
966
1041
+
Phe
GAA
[ENA]
¡û
>W1710619751
JMEH01000019
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
1300
1225
-
Phe
GAA
[ENA]
¡û
>W1710708907
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
699
774
+
Phe
GAA
[ENA]
¡û
>W1710708921
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
832
757
-
Phe
GAA
[ENA]
¡û
>W1710708938
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
486
561
+
Phe
GAA
[ENA]
¡û
>W1710708980
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
185
260
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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