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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.290481 (108 seq.)
>W1710786458
LJIY01000009
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
1485
1560
+
His
GTG
[ENA]
¡û
>W1710876948
LMPR01000015
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
490
417
-
His
GTG
[ENA]
¡û
>W1710877106
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76660
76733
+
His
GTG
[ENA]
¡û
>W1710877123
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
439
514
+
His
GTG
[ENA]
¡û
>W1710909382
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1277
1350
+
His
GTG
[ENA]
¡û
>W1711116963
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
464
539
+
His
GTG
[ENA]
¡û
>W1711116993
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774294
774221
-
His
GTG
[ENA]
¡û
>W1711166804
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1982800
1982727
-
His
GTG
[ENA]
¡û
>W1711256978
LYTG01000052
Bacillota
Exiguobacterium sp. SH31 [LYTG]
2357
2282
-
His
GTG
[ENA]
¡û
>W1711257009
LYTG01000087
Bacillota
Exiguobacterium sp. SH31 [LYTG]
88
163
+
His
GTG
[ENA]
¡û
>W131205128
ATCL01000018
Bacillota
Exiguobacterium chiriqhucha RW2 [ATCL]
380
305
-
His
GTG
[ENA]
¡û
>W131241565
BARY01000009
Bacillota
Exiguobacterium sp. OS-77 [BARY]
928285
928212
-
His
GTG
[ENA]
¡û
>W1711507271
MKXO01000001
Bacillota
Exiguobacterium aurantiacum [MKXO]
1157737
1157662
-
His
GTG
[ENA]
¡û
>W1711507310
MKXO01000020
Bacillota
Exiguobacterium aurantiacum [MKXO]
604
679
+
His
GTG
[ENA]
¡û
>W1711589646
MOEL01000005
Bacillota
Exiguobacterium sp. AT1b [MOEL]
1030
1105
+
His
GTG
[ENA]
¡û
>W1711632640
MPSZ01000001
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
887
960
+
His
GTG
[ENA]
¡û
>W1711632684
MPSZ01000023
Bacillota
Exiguobacterium indicum HHS 31 [MPSZ]
642
567
-
His
GTG
[ENA]
¡û
>W1711713068
MTCT01000002
Bacillota
Exiguobacterium sp. HVEsp1 [MTCT]
49366
49291
-
His
GTG
[ENA]
¡û
>W1711713106
MTCT01000008
Bacillota
Exiguobacterium sp. HVEsp1 [MTCT]
2108
2183
+
His
GTG
[ENA]
¡û
>W1712017228
NESR01000001
Bacillota
Kurthia gibsonii [NESR]
767
840
+
His
GTG
[ENA]
¡û
>W1712017333
NESR01000042
Bacillota
Kurthia gibsonii [NESR]
707
632
-
His
GTG
[ENA]
¡û
>C171040520
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
461981
462056
+
His
GTG
-
¡û
>C171040556
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
1162757
1162830
+
His
GTG
-
¡û
>C171072095
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
34847
34922
+
His
GTG
-
¡û
>C171072137
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
724109
724182
+
His
GTG
-
¡û
>W131202760
ASXD01000105
Bacillota
Exiguobacterium sp. S17 [ASXD]
914
989
+
His
GTG
[ENA]
¡û
>W131205112
ATCL01000011
Bacillota
Exiguobacterium chiriqhucha RW2 [ATCL]
532
607
+
His
GTG
[ENA]
¡û
>w003638
AADW02000003
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
279536
279459
-
His
GTG
[ENA]
¡û
>W08009423
ABPF01000072
Bacillota
Exiguobacterium sp. AT1b [ABPF]
2569
2497
-
His
GTG
[ENA]
¡û
>W141232103
BAUV01000002
Bacillota
Halalkalibacter akibai JCM 9157 [BAUV]
144005
144080
+
His
GTG
[ENA]
¡û
>W141232122
BAUV01000032
Bacillota
Halalkalibacter akibai JCM 9157 [BAUV]
698
771
+
His
GTG
[ENA]
¡û
>W141232158
BAUV01000057
Bacillota
Halalkalibacter akibai JCM 9157 [BAUV]
19139
19064
-
His
GTG
[ENA]
¡û
>C08004810
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
704704
704777
+
His
GTG
[Ensembl]
¡û
>WENV170022534
BCQK01018547
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
567
640
+
His
GTG
[ENA]
¢þ
>W141484756
JFYW01000001
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
1687446
1687373
-
His
GTG
[ENA]
¡û
>W141484770
JFYW01000005
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
90
165
+
His
GTG
[ENA]
¡û
>C191181517
CP040676
Bacillota
Exiguobacterium mexicanum A-EM [CP040676]
2073444
2073369
-
His
GTG
-
¡û
>W141563110
JHZT01000002
Bacillota
Exiguobacterium marinum DSM 16307 [JHZT]
436
511
+
His
GTG
[ENA]
¡û
>W141563144
JHZT01000003
Bacillota
Exiguobacterium marinum DSM 16307 [JHZT]
2042526
2042451
-
His
GTG
[ENA]
¡û
>W141563251
JHZV01000005
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
1001212
1001139
-
His
GTG
[ENA]
¡û
>W141620188
JJMW01000033
Bacillota
Exiguobacterium alkaliphilum 12·î1Æü [JJMW]
1038
1113
+
His
GTG
[ENA]
¡û
>W141620215
JJMW01000053
Bacillota
Exiguobacterium alkaliphilum 12·î1Æü [JJMW]
847
772
-
His
GTG
[ENA]
¡û
>W141726033
JNAA01000040
Bacillota
Exiguobacterium sp. AB2 [JNAA]
647
572
-
His
GTG
[ENA]
¡û
>W141726057
JNAA01000089
Bacillota
Exiguobacterium sp. AB2 [JNAA]
927
1002
+
His
GTG
[ENA]
¡û
>W141730796
JNIP01000001
Bacillota
Exiguobacterium chiriqhucha GIC31 [JNIP]
2912999
2913074
+
His
GTG
[ENA]
¡û
>W141730832
JNIP01000001
Bacillota
Exiguobacterium chiriqhucha GIC31 [JNIP]
2216647
2216572
-
His
GTG
[ENA]
¡û
>W141730846
JNIQ01000001
Bacillota
Exiguobacterium aurantiacum DSM 6208 [JNIQ]
514508
514583
+
His
GTG
[ENA]
¡û
>W141730881
JNIQ01000001
Bacillota
Exiguobacterium aurantiacum DSM 6208 [JNIQ]
2697023
2696948
-
His
GTG
[ENA]
¡û
>W141730917
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
283166
283239
+
His
GTG
[ENA]
¡û
>W141730933
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2754448
2754523
+
His
GTG
[ENA]
¡û
>W141731019
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
2287515
2287588
+
His
GTG
[ENA]
¡û
>W141807049
JPOD01000001
Bacillota
Exiguobacterium sp. NG55 [JPOD]
225873
225948
+
His
GTG
[ENA]
¡û
>W141807061
JPOD01000003
Bacillota
Exiguobacterium sp. NG55 [JPOD]
4725
4800
+
His
GTG
[ENA]
¡û
>C141009940
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
677981
678054
+
His
GTG
[Ensembl]
¡û
>C141009956
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
3164111
3164186
+
His
GTG
[Ensembl]
¡û
>C09106155
CP001615
Bacillota
Exiguobacterium sp. AT1b [CP001615]
2381221
2381296
+
His
GTG
[Ensembl]
¡û
>C09106170
CP001615
Bacillota
Exiguobacterium sp. AT1b [CP001615]
1662420
1662345
-
His
GTG
[Ensembl]
¡û
>W1910930190
NISN01000003
Bacillota
Bacillus sp. FJAT-45037 [NISN]
351390
351465
+
His
GTG
[ENA]
¡û
>W1910940958
NJAX01000021
Bacillota
Bacillus solitudinis FJAT-45086 [NJAX]
38686
38761
+
His
GTG
[ENA]
¡û
>W1910940967
NJAX01000024
Bacillota
Bacillus solitudinis FJAT-45086 [NJAX]
103881
103956
+
His
GTG
[ENA]
¡û
>W1911770658
QXJB01000001
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
743
816
+
His
GTG
[ENA]
¡û
>SRA1004459
SRR006906.36647
metagenomic water samples (SRP000427)
102
27
-
His
GTG
[SRA]
>W1810591570
QFVR01000029
Bacillota
Kurthia sibirica ATCC 49154 [QFVR]
29041
28966
-
His
GTG
[ENA]
¡û
>W1810591571
QFVR01000029
Bacillota
Kurthia sibirica ATCC 49154 [QFVR]
28915
28840
-
His
GTG
[ENA]
¡û
>W1810760524
QPKF01000001
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
1892880
1892807
-
His
GTG
[ENA]
¡û
>W1810760975
QPKS01000003
Bacillota
Exiguobacterium flavidum HF60 [QPKS]
265665
265591
-
His
GTG
[ENA]
¡û
>W1810823261
QSGS01000012
Bacillota
Exiguobacterium sp. AM39-5BH [QSGS]
54497
54422
-
His
GTG
[ENA]
¡û
>W1810823284
QSGS01000035
Bacillota
Exiguobacterium sp. AM39-5BH [QSGS]
773
848
+
His
GTG
[ENA]
¡û
>C10102083
CP001878
Bacillota
Alkalihalophilus pseudofirmus OF4 [CP001878]
2195048
2195123
+
His
GTG
[Ensembl]
¡û
>W1511325288
JQGI01000013
Bacillota
Exiguobacterium mexicanum HUD [JQGI]
779
854
+
His
GTG
[ENA]
¡û
>W1511325296
JQGI01000022
Bacillota
Exiguobacterium mexicanum HUD [JQGI]
405
480
+
His
GTG
[ENA]
¡û
>W1511403353
JTLB01000007
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
40430
40355
-
His
GTG
[ENA]
¡û
>W1511403389
JTLB01000042
Bacillota
Exiguobacterium sp. ZOR0005 [JTLB]
727
652
-
His
GTG
[ENA]
¡û
>W1511403834
JTLL01000043
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
663
588
-
His
GTG
[ENA]
¡û
>W1511638504
LDNY01000001
Bacillota
Exiguobacterium sp. JLM-2 [LDNY]
2092235
2092160
-
His
GTG
[ENA]
¡û
>W1511686078
LFQN01000017
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
40843
40770
-
His
GTG
[ENA]
¡û
>W1511686118
LFQN01000053
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
356
431
+
His
GTG
[ENA]
¡û
>W1511699989
LGIW01000015
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
719
792
+
His
GTG
[ENA]
¡û
>C161042952
CP012601
Bacillota
Bacillus sp. FJAT-22090 [CP012601]
1498
1573
+
His
GTG
[Ensembl]
¡û
>W1610043200
BAZQ01000002
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
144005
144080
+
His
GTG
[ENA]
¡û
>W1610043219
BAZQ01000032
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
698
771
+
His
GTG
[ENA]
¡û
>W1610043255
BAZQ01000057
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
19139
19064
-
His
GTG
[ENA]
¡û
>W121087096
AKKV01000024
Bacillota
Fictibacillus macauensis ZFHKF-1 [AKKV]
343665
343590
-
His
GTG
[ENA]
¡û
>W121087109
AKKV01000026
Bacillota
Fictibacillus macauensis ZFHKF-1 [AKKV]
19329
19254
-
His
GTG
[ENA]
¡û
>W1610521258
JMEH01000011
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
1221
1296
+
His
GTG
[ENA]
¡û
>W1610521273
JMEH01000019
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
1129
1054
-
His
GTG
[ENA]
¡û
>W1610589630
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
974
1047
+
His
GTG
[ENA]
¡û
>W1610589643
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
661
586
-
His
GTG
[ENA]
¡û
>W1610589661
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
761
834
+
His
GTG
[ENA]
¡û
>W1610589702
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
356
431
+
His
GTG
[ENA]
¡û
>W1610650313
LJIY01000009
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
1485
1560
+
His
GTG
[ENA]
¡û
>W1610739294
LMPR01000015
Bacillota
Exiguobacterium sp. Leaf187 [LMPR]
490
417
-
His
GTG
[ENA]
¡û
>W1610739452
LMPV01000001
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
76660
76733
+
His
GTG
[ENA]
¡û
>W1610739469
LMPV01000004
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
439
514
+
His
GTG
[ENA]
¡û
>W1610767741
LNQL01000002
Bacillota
Exiguobacterium enclense [LNQL]
1277
1350
+
His
GTG
[ENA]
¡û
>W1610928322
LUCU01000004
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
464
539
+
His
GTG
[ENA]
¡û
>W1610928352
LUCU01000022
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
774294
774221
-
His
GTG
[ENA]
¡û
>W1610977344
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1982800
1982727
-
His
GTG
[ENA]
¡û
>W1710040360
BAZQ01000002
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
144005
144080
+
His
GTG
[ENA]
¡û
>W1710040379
BAZQ01000032
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
698
771
+
His
GTG
[ENA]
¡û
>W1710040415
BAZQ01000057
Bacillota
Halalkalibacter akibai JCM 9157 [BAZQ]
19139
19064
-
His
GTG
[ENA]
¡û
>W1710511217
FMYN01000002
Bacillota
Exiguobacterium enclense [FMYN]
1277
1350
+
His
GTG
[ENA]
¡û
>W1710619738
JMEH01000011
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
1221
1296
+
His
GTG
[ENA]
¡û
>W1710619753
JMEH01000019
Bacillota
Exiguobacterium chiriqhucha pavilionensis [JMEH]
1129
1054
-
His
GTG
[ENA]
¡û
>W1710708910
LDQV01000035
Bacillota
Exiguobacterium indicum [LDQV]
974
1047
+
His
GTG
[ENA]
¡û
>W1710708923
LDQV01000053
Bacillota
Exiguobacterium indicum [LDQV]
661
586
-
His
GTG
[ENA]
¡û
>W1710708941
LDQW01000008
Bacillota
Exiguobacterium indicum [LDQW]
761
834
+
His
GTG
[ENA]
¡û
>W1710708982
LDQW01000085
Bacillota
Exiguobacterium indicum [LDQW]
356
431
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK